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AMBER Archive (2005) - By Thread
Most recent messages3972 messages sorted by: [ author ] [ date ] [ subject ]
About this archive
Starting: Sat Jan 01 2005 - 08:25:14 CST
Ending: Sat Dec 31 2005 - 12:51:27 CST
- Re: AMBER: Problem with computing Resp charges using RED Cenk Andac (Sat Jan 01 2005 - 08:08:24 CST)
- AMBER: Sander and NMODE energy minimization fangyu liang (Sat Jan 01 2005 - 23:53:49 CST)
- Re: AMBER: NSCM David A. Case (Sun Jan 02 2005 - 16:35:54 CST)
- AMBER: How can i use AMBER with CHARMM forcefield parameter? ÍőĐĄÇĺ (Sun Jan 02 2005 - 21:54:25 CST)
- AMBER: MM_PBSA fillratio error Jiten (Mon Jan 03 2005 - 03:36:30 CST)
- AMBER: Hbonds restraints OK but Dihedral restraints not applied pl (Mon Jan 03 2005 - 08:06:48 CST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied David A. Case (Mon Jan 03 2005 - 10:34:09 CST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied Bill Ross (Tue Jan 04 2005 - 12:07:49 CST)
- AMBER: AMBER related employment Anthony Fejes (Mon Jan 03 2005 - 19:43:24 CST)
- AMBER: lipid bilayer membrane force field parameter Xiaoqing,Wang (Tue Jan 04 2005 - 03:51:47 CST)
- AMBER: Steered Molecular Dynamics with AMBER? Rino Ragno (Tue Jan 04 2005 - 16:33:09 CST)
- Re: AMBER: Dummy Atoms: How to create them? Ilyas Yildirim (Tue Jan 04 2005 - 21:25:24 CST)
- AMBER: lipid parameter file Xiaoqing,Wang (Wed Jan 05 2005 - 02:23:07 CST)
- AMBER: distance between images cailliez (Wed Jan 05 2005 - 04:34:46 CST)
- AMBER: MM_PBSA arguments for MM calculations Nelson Fonseca (Wed Jan 05 2005 - 05:54:30 CST)
- AMBER: Floating Exception in sander anshul_at_imtech.res.in (Wed Jan 05 2005 - 17:26:20 CST)
- AMBER: General Question about AMBER's Free Energy Perturbation Method Chris Moth (Wed Jan 05 2005 - 16:06:33 CST)
- AMBER: about install amber8 on windows xiaowen (Thu Jan 06 2005 - 16:56:53 CST)
- AMBER: recompiling problem on IBM aix Yuuki A. Komata (Thu Jan 06 2005 - 20:35:46 CST)
- AMBER: Questions about sander.QMMM Cenk Andac (Fri Jan 07 2005 - 09:51:56 CST)
- AMBER: dynamics Germán Sciaini (Sat Jan 08 2005 - 13:51:30 CST)
- AMBER: Floating Exception and installation on Digital Unix. anshul_at_imtech.res.in (Sun Jan 09 2005 - 21:32:11 CST)
- AMBER: error in parallel gsmith_at_ibab.ac.in (Mon Jan 10 2005 - 02:18:51 CST)
- AMBER: .dat and frcmod files Ilyas Yildirim (Mon Jan 10 2005 - 16:10:36 CST)
- Re: AMBER: .dat and frcmod files Anthony Fejes (Mon Jan 10 2005 - 16:47:12 CST)
- Re: AMBER: .dat and frcmod files Germán Sciaini (Tue Jan 11 2005 - 04:46:03 CST)
- AMBER: pmemd and restraints Filip Lankas (Wed Jan 26 2005 - 11:01:50 CST)
- Re: AMBER: pmemd and restraints Robert Duke (Wed Jan 26 2005 - 11:45:01 CST)
- Re: AMBER: pmemd and restraints Fabien Cailliez (Thu Jan 27 2005 - 03:01:31 CST)
- Re: AMBER: pmemd and restraints Robert Duke (Thu Jan 27 2005 - 07:15:00 CST)
- AMBER: .dat and frcmod files Ilyas Yildirim (Mon Jan 10 2005 - 16:10:36 CST)
- AMBER: istart2 gsmith_at_ibab.ac.in (Mon Jan 10 2005 - 07:14:15 CST)
- AMBER: guanidinium chloride Monica Civera (Mon Jan 10 2005 - 09:27:38 CST)
- AMBER: Copper library? Cenk Andac (Mon Jan 10 2005 - 12:31:51 CST)
- AMBER: the DNA conformation after engery minimization using NMODE Xiaowei (David) Li (Mon Jan 10 2005 - 13:32:26 CST)
- AMBER: AMBER tutorial ambpdb question Kara Wald (Mon Jan 10 2005 - 19:33:44 CST)
- Re: AMBER: the DNA conformation after engery minimization using NMODE Bill Ross (Mon Jan 10 2005 - 21:56:25 CST)
- AMBER: parallel run gsmith_at_ibab.ac.in (Tue Jan 11 2005 - 04:27:20 CST)
- AMBER: sander free energy calculation Cai, Yufeng (Tue Jan 11 2005 - 13:47:03 CST)
- AMBER: PB dynamics Nelson Fonseca (Wed Jan 12 2005 - 04:06:33 CST)
- AMBER: amber8 parallel sander yen li (Wed Jan 12 2005 - 04:57:19 CST)
- Re: AMBER: amber8 parallel sander Carlos Simmerling (Wed Jan 12 2005 - 06:38:30 CST)
- Re: AMBER: amber8 parallel sander Robert Duke (Wed Jan 12 2005 - 07:03:05 CST)
- Re: AMBER: amber8 parallel sander Carlos Simmerling (Wed Jan 12 2005 - 09:30:22 CST)
- Re: AMBER: amber8 parallel sander Bill Ross (Wed Jan 12 2005 - 14:12:18 CST)
- Re: AMBER: amber8 parallel sander yen li (Mon Jan 17 2005 - 11:55:26 CST)
- Re: AMBER: amber8 parallel sander Kathleen Erickson (Thu Sep 22 2005 - 11:44:39 CDT)
- Re: AMBER: amber8 parallel sander Peter Gannett (Thu Sep 22 2005 - 16:15:12 CDT)
- Re: AMBER: amber8 parallel sander Peter Gannett (Thu Sep 22 2005 - 16:18:22 CDT)
- Re: AMBER: amber8 parallel sander Kathleen Erickson (Mon Oct 03 2005 - 15:37:47 CDT)
- Re: AMBER: amber8 parallel sander MURAT CETINKAYA (Mon Oct 03 2005 - 21:04:04 CDT)
- AMBER: units Monica Civera (Wed Jan 12 2005 - 09:12:19 CST)
- AMBER: Problem with restart file Azira Muhamad (Thu Jan 13 2005 - 01:45:30 CST)
- AMBER: PBCAL=0. Problems in MM/PBSA Javier Perez Miron (Thu Jan 13 2005 - 14:41:29 CST)
- Re: AMBER: PBCAL=0. Problems in MM/PBSA Holger Gohlke (Fri Jan 14 2005 - 01:31:45 CST)
- AMBER: problem runing parallel (REM) on tru64 Sergio E. Wong (Fri Jan 21 2005 - 18:22:26 CST)
- Re: AMBER: problem runing parallel (REM) on tru64 David A. Case (Sat Jan 22 2005 - 12:25:55 CST)
- Re: AMBER: problem runing parallel (REM) on tru64 Sergio E. Wong (Sat Jan 22 2005 - 14:44:23 CST)
- AMBER: amber 8 benchmarks dec alpha Sergio E. Wong (Mon Jan 24 2005 - 16:08:14 CST)
- Re: AMBER: amber 8 benchmarks dec alpha Robert Duke (Mon Jan 24 2005 - 16:27:50 CST)
- Re: AMBER: amber 8 benchmarks dec alpha Sergio E. Wong (Mon Jan 24 2005 - 17:54:41 CST)
- Re: AMBER: problem runing parallel (REM) on tru64 David A. Case (Sat Jan 22 2005 - 12:25:55 CST)
- AMBER: last call for early registrations for "Horizons2005" Vlad Cojocaru (Fri Jan 14 2005 - 07:19:00 CST)
- AMBER: protonate Gustavo Pierdominici Sottile (Fri Jan 14 2005 - 12:05:49 CST)
- FW: AMBER: parametrization problem Ross Walker (Fri Jan 14 2005 - 16:39:12 CST)
- AMBER: Coordinate Superimposition in PTRAJ Vineet Pande (Sun Jan 16 2005 - 05:42:09 CST)
- AMBER: How to set AMBER parameter files for lipid? Xiaoqing Wang (Sun Jan 16 2005 - 19:38:49 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error] Jordi Rodrigo (Mon Jan 17 2005 - 02:02:51 CST)
- AMBER: distance restraint and file fort.35 Fabien Cailliez (Mon Jan 17 2005 - 05:34:00 CST)
- AMBER: RMS fluctuations along modes obtained from PCA Majid moghaddam (Mon Jan 17 2005 - 07:47:56 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error Jordi Rodrigo (Mon Jan 17 2005 - 06:37:00 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error Jordi Rodrigo (Mon Jan 17 2005 - 07:25:14 CST)
- AMBER: new aminoacid Gustavo Pierdominici Sottile (Mon Jan 17 2005 - 10:26:32 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error Jordi Rodrigo (Mon Jan 17 2005 - 08:57:53 CST)
- AMBER: Compiling AMBER 8 for Mac OSX (Parallel) nallen_at_unca.edu (Mon Jan 17 2005 - 11:41:06 CST)
- AMBER: H-atom types attached to a carbon atom next to carbonyl group Takashi Nakamura (Mon Jan 17 2005 - 11:52:56 CST)
- AMBER: SO4 prep file Jagdish Rai (Tue Jan 18 2005 - 06:36:42 CST)
- AMBER: details of new aminoacid Gustavo Pierdominici Sottile (Tue Jan 18 2005 - 07:01:15 CST)
- AMBER: GB differences between AMBER7 and AMBER8 Fabien Cailliez (Tue Jan 18 2005 - 07:53:04 CST)
- AMBER: problem with position restraints (refc file) pl (Tue Jan 18 2005 - 09:25:27 CST)
- AMBER: Amber8 installation problems on Sparc/Solaris9 Joe Nolan (Tue Jan 18 2005 - 10:17:35 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error Jordi Rodrigo (Tue Jan 18 2005 - 08:46:27 CST)
- AMBER: Converting prmtop and inpcrd files Andrew Box (Tue Jan 18 2005 - 17:02:02 CST)
- Re: AMBER: Converting prmtop and inpcrd files Bill Ross (Tue Jan 18 2005 - 17:43:04 CST)
- AMBER: Scaling of charges in a polarizable simulation ! Pradipta Bandyopadhyay (Wed Jan 19 2005 - 10:02:37 CST)
- AMBER: IGB parameter Javier Perez Miron (Wed Jan 19 2005 - 11:09:38 CST)
- AMBER: enhanced sampling methods Vlad Cojocaru (Wed Jan 19 2005 - 12:13:58 CST)
- Re: AMBER: Scaling of charges in a polarizable simulation ! Piotr Cieplak (Wed Jan 19 2005 - 12:14:05 CST)
- AMBER: ptraj analysis Thomas E. Cheatham, III (Wed Jan 19 2005 - 12:16:17 CST)
- AMBER:Hydroxy Proline S.Sundar Raman (Thu Jan 20 2005 - 03:19:42 CST)
- AMBER: pmemd and distance restraint Fabien Cailliez (Thu Jan 20 2005 - 04:39:20 CST)
- AMBER: some question about MM-PBSA scopio (Thu Jan 20 2005 - 09:10:39 CST)
- AMBER: Cutoff for anal Harianto (Thu Jan 20 2005 - 11:50:14 CST)
- AMBER: new tutorial available David A. Case (Thu Jan 20 2005 - 13:06:30 CST)
- AMBER: Can someone recommend a tutorial? Kara Wald (Thu Jan 20 2005 - 14:28:46 CST)
- AMBER: sander failure ygao_at_phase1.unl.edu (Thu Jan 20 2005 - 15:46:56 CST)
- RE: AMBER: sander failure Ross Walker (Thu Jan 20 2005 - 16:04:32 CST)
- RE: AMBER: sander failure ygao_at_phase1.unl.edu (Thu Jan 20 2005 - 16:09:56 CST)
- Re: AMBER: sander failure Carlos Simmerling (Thu Jan 20 2005 - 16:20:00 CST)
- RE: AMBER: sander failure Ross Walker (Thu Jan 20 2005 - 16:26:58 CST)
- RE: AMBER: sander failure ygao_at_phase1.unl.edu (Thu Jan 20 2005 - 16:31:37 CST)
- RE: AMBER: sander failure Ross Walker (Thu Jan 20 2005 - 16:47:34 CST)
- Re: AMBER: sander failure Asim Okur (Thu Jan 20 2005 - 16:50:25 CST)
- RE: AMBER: sander failure ygao_at_phase1.unl.edu (Thu Jan 20 2005 - 16:09:56 CST)
- RE: AMBER: sander failure Ross Walker (Thu Jan 20 2005 - 16:04:32 CST)
- AMBER: Suspended (tty input) ygao_at_phase1.unl.edu (Thu Jan 20 2005 - 17:39:48 CST)
- AMBER: &dipoles in sander Cenk Andac (Fri Jan 21 2005 - 05:59:47 CST)
- RE: AMBER: &dipoles in sander Ross Walker (Fri Jan 21 2005 - 12:26:24 CST)
- RE: AMBER: &dipoles in sander Cenk Andac (Sat Jan 22 2005 - 03:47:50 CST)
- RE: AMBER: &dipoles in sander Ross Walker (Sat Jan 22 2005 - 13:11:54 CST)
- RE: AMBER: &dipoles in sander Cenk Andac (Fri Jan 28 2005 - 04:04:21 CST)
- RE: AMBER: &dipoles in sander Ross Walker (Fri Jan 28 2005 - 12:10:21 CST)
- Re: AMBER: &dipoles in sander David A. Case (Fri Jan 28 2005 - 12:21:59 CST)
- Re: AMBER: &dipoles in sander Cenk Andac (Fri Jan 28 2005 - 13:25:36 CST)
- RE: AMBER: &dipoles in sander Cenk Andac (Sat Jan 22 2005 - 03:47:50 CST)
- RE: AMBER: &dipoles in sander Ross Walker (Fri Jan 21 2005 - 12:26:24 CST)
- AMBER: mm_pbsa example doesn't run Yuuki Komata (Fri Jan 21 2005 - 06:10:48 CST)
- AMBER: amber 8 installation Stern, Julie (Fri Jan 21 2005 - 11:28:17 CST)
- AMBER: Andersen thermostat: target T? Arantxa Sanz (Fri Jan 21 2005 - 13:06:01 CST)
- AMBER: carnal - water-mediated HBond Sichun Yang (Fri Jan 21 2005 - 16:36:52 CST)
- AMBER: eedmeth=5 Lihua Wang (Fri Jan 21 2005 - 18:20:59 CST)
- AMBER: nmode calculation mingche Pan (Fri Jan 21 2005 - 19:43:32 CST)
- Re: AMBER: carnal - water-mediated HBond Bill Ross (Sat Jan 22 2005 - 22:49:09 CST)
- AMBER: Question about TI integral method tanc_at_uci.edu (Sun Jan 23 2005 - 04:01:33 CST)
- AMBER: D-amino acid prep-files(simple method) Jagdish Rai (Sun Jan 23 2005 - 08:18:45 CST)
- AMBER: system size limit Guanglei Cui (Sun Jan 23 2005 - 23:54:06 CST)
- AMBER: What does a crash mean while running a md simulation? shuli kang (Sun Jan 23 2005 - 23:56:00 CST)
- RE: AMBER: What does a crash mean while running a md simulation? Ross Walker (Mon Jan 24 2005 - 13:19:48 CST)
- Re: AMBER: What does a crash mean while running a md simulation? shuli kang (Mon Jan 24 2005 - 23:58:54 CST)
- RE: AMBER: What does a crash mean while running a md simulation? Ross Walker (Tue Jan 25 2005 - 00:28:32 CST)
- Re: AMBER: What does a crash mean while running a md simulation? shuli kang (Tue Jan 25 2005 - 01:35:45 CST)
- Re[2]: AMBER: What does a crash mean while running a md simulation? sychen (Tue Dec 06 2005 - 06:16:49 CST)
- RE: Re[2]: AMBER: What does a crash mean while running a md simulation? Ross Walker (Tue Dec 06 2005 - 10:54:11 CST)
- Re: AMBER: What does a crash mean while running a md simulation? shuli kang (Mon Jan 24 2005 - 23:58:54 CST)
- RE: AMBER: What does a crash mean while running a md simulation? Ross Walker (Mon Jan 24 2005 - 13:19:48 CST)
- AMBER: FW: amber 8 problem Vojtěch Klusák (Mon Jan 24 2005 - 02:13:47 CST)
- AMBER: nmode calculation mingche Pan (Mon Jan 24 2005 - 09:34:18 CST)
- AMBER: AMBER 8: Freeze AND restrain questions Guillaume Bollot (Mon Jan 24 2005 - 10:19:11 CST)
- AMBER: test suite possible failures Stern, Julie (Mon Jan 24 2005 - 13:39:42 CST)
- AMBER: How to make PDB file by myself Mayumi Haga (Mon Jan 24 2005 - 22:23:32 CST)
- AMBER: TI with electrostatic decoupling at sander yipinl_at_umich.edu (Mon Jan 24 2005 - 23:15:43 CST)
- Re: AMBER: TI with electrostatic decoupling at sander David A. Case (Tue Jan 25 2005 - 10:41:36 CST)
- Re: AMBER: TI with electrostatic decoupling at sander yipinl_at_umich.edu (Wed Jan 26 2005 - 11:19:43 CST)
- Re: AMBER: TI with electrostatic decoupling at sander David A. Case (Wed Jan 26 2005 - 23:51:32 CST)
- Re: AMBER: TI with electrostatic decoupling at sander yipinl_at_umich.edu (Thu Jan 27 2005 - 11:39:46 CST)
- Re: AMBER: TI with electrostatic decoupling at sander David A. Case (Thu Jan 27 2005 - 19:27:10 CST)
- Re: AMBER: TI with electrostatic decoupling at sander yipinl_at_umich.edu (Wed Jan 26 2005 - 11:19:43 CST)
- Re: AMBER: TI with electrostatic decoupling at sander David A. Case (Tue Jan 25 2005 - 10:41:36 CST)
- AMBER: calculating electrostatic potential Vlad Cojocaru (Tue Jan 25 2005 - 04:59:48 CST)
- AMBER: PBSA residual and pairwise decompostion Jiten (Tue Jan 25 2005 - 07:43:38 CST)
- AMBER: LEAP heddi (Tue Jan 25 2005 - 07:42:36 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error Jordi Rodrigo (Tue Jan 25 2005 - 08:28:13 CST)
- AMBER: gold atoms Stern, Julie (Tue Jan 25 2005 - 10:53:09 CST)
- AMBER: collision frequency in GBSA dynamics Giulio Rastelli (Tue Jan 25 2005 - 12:33:33 CST)
- AMBER: NAN errors Venkata S Koppuravuri (Tue Jan 25 2005 - 15:39:45 CST)
- AMBER: ANTECHAMBER & DIVCON Vineet Pande (Wed Jan 26 2005 - 04:18:17 CST)
- AMBER: how to solvate in TIP5P box ygao_at_phase1.unl.edu (Wed Jan 26 2005 - 09:59:43 CST)
- AMBER: Increasing Volume with ntb=1 Harianto (Wed Jan 26 2005 - 14:12:29 CST)
- AMBER:idecomp B (Thu Jan 27 2005 - 05:22:37 CST)
- AMBER: replica exchange trouble with unit 6 Yuuki Komata (Thu Jan 27 2005 - 08:39:03 CST)
- AMBER: antechamber error message Yanze Zhang (Thu Jan 27 2005 - 09:02:46 CST)
- AMBER: problem with pressure equilibration Cenk Andac (Thu Jan 27 2005 - 16:23:59 CST)
- AMBER: question about xwin load pdb file xiaowen (Thu Jan 27 2005 - 23:04:57 CST)
- AMBER: sugar pucker with Carnal and ptraj Vlad Cojocaru (Fri Jan 28 2005 - 08:56:23 CST)
- AMBER: pucker: deatails about pucker calculation Vlad Cojocaru (Fri Jan 28 2005 - 09:13:13 CST)
- AMBER: question about xwin load pdb file xiaowen (Fri Jan 28 2005 - 10:48:28 CST)
- AMBER: plane definition in ptraj Vlad Cojocaru (Fri Jan 28 2005 - 12:00:23 CST)
- AMBER: Problems with xLEaP Kara Di Giorgio (Fri Jan 28 2005 - 16:04:14 CST)
- Re: AMBER: Problems with xLEaP Bill Ross (Fri Jan 28 2005 - 16:26:12 CST)
- AMBER: NCOPY definition Kenley Barrett (Fri Jan 28 2005 - 16:59:14 CST)
- AMBER: Problem in ptraj anshul_at_imtech.res.in (Mon Jan 31 2005 - 16:23:30 CST)
- AMBER: amber 8 problem Vojtěch Klusák (Mon Jan 31 2005 - 07:01:35 CST)
- AMBER: gaussian output file Yanze Zhang (Mon Jan 31 2005 - 11:09:40 CST)
- AMBER: skip snapshots with ptraj in amber 8.0 Eric Hu (Mon Jan 31 2005 - 13:30:58 CST)
- AMBER: Manuals need update: protonate -b and -c options gone in Amber 7 and 8 Chris Moth (Mon Jan 31 2005 - 15:39:56 CST)
- AMBER: amber8 in IBM-SP4 Jiten (Mon Jan 31 2005 - 21:32:28 CST)
- AMBER: N Metyl amino acids Andrew Box (Mon Jan 31 2005 - 23:14:47 CST)
- AMBER: vacuum bubbles in system equilibration Marie-Pierre Durrieu (Tue Feb 01 2005 - 04:56:21 CST)
- AMBER: Carnal in Amber8 Vlad Cojocaru (Tue Feb 01 2005 - 10:11:09 CST)
- AMBER: Multiple dihedral restraints Joseph Fernandez (Tue Feb 01 2005 - 11:29:40 CST)
- Re: AMBER: Multiple dihedral restraints David A. Case (Tue Feb 01 2005 - 16:54:49 CST)
- AMBER: Multiple dihedral restraints (follow up) Joseph Fernandez (Wed Feb 02 2005 - 12:11:01 CST)
- Re: AMBER: Multiple dihedral restraints (follow up) David A. Case (Wed Feb 02 2005 - 13:04:47 CST)
- AMBER: non-periodic condition gsciaini (Thu Feb 03 2005 - 10:40:46 CST)
- RE: AMBER: non-periodic condition Ross Walker (Thu Feb 03 2005 - 12:27:30 CST)
- RE: AMBER: non-periodic condition Germán Sciaini (Thu Feb 03 2005 - 14:42:34 CST)
- AMBER: dppsv returns error code: 29 Xiaowei (David) Li (Fri Feb 04 2005 - 11:58:56 CST)
- Re: AMBER: dppsv returns error code: 29 David A. Case (Fri Feb 04 2005 - 16:48:38 CST)
- Re: AMBER: Multiple dihedral restraints (follow up) M. L. Dodson (Thu Feb 03 2005 - 14:07:11 CST)
- AMBER: Multiple dihedral restraints (follow up) Joseph Fernandez (Wed Feb 02 2005 - 12:11:01 CST)
- Re: AMBER: Multiple dihedral restraints David A. Case (Tue Feb 01 2005 - 16:54:49 CST)
- AMBER: Redhat Enterprise Linux Beale, John (Tue Feb 01 2005 - 11:49:20 CST)
- Re: AMBER: Carnal in Amber8 Bill Ross (Tue Feb 01 2005 - 13:47:15 CST)
- AMBER: doubts with a new aminoacid Gustavo Pierdominici Sottile (Tue Feb 01 2005 - 14:28:52 CST)
- AMBER: External Electric Field Brandon Tefft (Tue Feb 01 2005 - 15:30:22 CST)
- AMBER: sander segmentation fault Xin Wang (Tue Feb 01 2005 - 16:15:12 CST)
- AMBER: xleap: different distance results from "check" command in xleap Woojin Lee (Tue Feb 01 2005 - 23:54:14 CST)
- AMBER: Compilation problem at dual processor linux ! Pradipta Bandyopadhyay (Wed Feb 02 2005 - 06:32:52 CST)
- AMBER: change of prmtop file Gustavo Pierdominici Sottile (Wed Feb 02 2005 - 09:43:34 CST)
- AMBER: xleap MOVE and .lib file Stern, Julie (Wed Feb 02 2005 - 11:01:55 CST)
- AMBER: amber 8 system requirements dkohen_at_carleton.edu (Wed Feb 02 2005 - 12:28:48 CST)
- AMBER: gaff frcmod file for TI calculation Eric Hu (Wed Feb 02 2005 - 17:50:00 CST)
- AMBER: question about tleap load pdb file xiaowen (Wed Feb 02 2005 - 21:19:19 CST)
- AMBER: protonate and input conversion error Stern, Julie (Thu Feb 03 2005 - 10:48:20 CST)
- AMBER: DNA melting free energy calculation lei jia (Thu Feb 03 2005 - 18:39:57 CST)
- AMBER: unnatural ligand Eric Hu (Thu Feb 03 2005 - 21:37:41 CST)
- AMBER: clusters Germán Sciaini (Fri Feb 04 2005 - 06:36:48 CST)
- AMBER: tleap load pdb file xiaowen (Fri Feb 04 2005 - 09:44:17 CST)
- AMBER: tleap load pdb file xiaowen (Fri Feb 04 2005 - 15:18:09 CST)
- Re: AMBER: tleap load pdb file David A. Case (Fri Feb 04 2005 - 16:45:50 CST)
- Re: AMBER: tleap load pdb file xiaowen (Sat Feb 05 2005 - 11:20:12 CST)
- RE: AMBER: tleap load pdb file Ross Walker (Sun Feb 06 2005 - 12:50:29 CST)
- RE: AMBER: tleap load pdb file xiaowen (Mon Feb 07 2005 - 14:58:39 CST)
- RE: AMBER: tleap load pdb file xiaowen (Mon Feb 07 2005 - 21:52:36 CST)
- Re: AMBER: tleap load pdb file xiaowen (Wed Feb 09 2005 - 12:51:44 CST)
- AMBER: Antechamber/formatting question Kara Di Giorgio (Fri Feb 04 2005 - 17:05:18 CST)
- Re: AMBER: Antechamber/formatting question David A. Case (Sat Feb 05 2005 - 13:17:24 CST)
- Re: AMBER: Antechamber/formatting question Kara Di Giorgio (Fri Feb 18 2005 - 12:20:40 CST)
- Re: AMBER: Antechamber/formatting question YoungJin Cho (Mon Feb 21 2005 - 10:15:32 CST)
- Re: AMBER: Antechamber/formatting question Kara Di Giorgio (Fri Feb 25 2005 - 18:43:36 CST)
- Re: AMBER: Antechamber/formatting question Ilyas Yildirim (Fri Feb 25 2005 - 19:31:46 CST)
- Re: AMBER: Antechamber/formatting question Kara Di Giorgio (Fri Feb 25 2005 - 20:02:40 CST)
- RE: AMBER: Antechamber/formatting question Ross Walker (Sun Feb 27 2005 - 13:56:18 CST)
- Re: AMBER: Antechamber/formatting question Kara Di Giorgio (Sun Feb 27 2005 - 19:13:19 CST)
- Re: AMBER: Antechamber/formatting question FyD (Sun Feb 27 2005 - 22:12:37 CST)
- Re: AMBER: Antechamber/formatting question FyD (Sun Feb 27 2005 - 22:43:23 CST)
- AMBER: vlimit problem Ilyas Yildirim (Fri Feb 25 2005 - 19:45:03 CST)
- Re: AMBER: vlimit problem David A. Case (Mon Feb 28 2005 - 11:40:26 CST)
- Re: AMBER: Antechamber/formatting question Kara Di Giorgio (Fri Feb 18 2005 - 12:20:40 CST)
- AMBER: Dynamics error S.Sundar Raman (Tue Feb 08 2005 - 05:25:07 CST)
- Re: AMBER: Antechamber/formatting question David A. Case (Sat Feb 05 2005 - 13:17:24 CST)
- AMBER: huge bond distances in new residue Stern, Julie (Fri Feb 04 2005 - 17:48:14 CST)
- AMBER: trajectory of minimization Stern, Julie (Fri Feb 04 2005 - 17:49:17 CST)
- AMBER: Is droplet boundary condition option possible ? Soo (Sat Feb 05 2005 - 00:18:36 CST)
- AMBER: loading pdb in leap to create parmeter files mrbroad_at_ilstu.edu (Sat Feb 05 2005 - 15:24:04 CST)
- AMBER: Tutorial Request Kara Di Giorgio (Sun Feb 06 2005 - 11:01:15 CST)
- AMBER: inconsistent ordering in an improper dihedral of TRP Sanghyun Park (Sun Feb 06 2005 - 22:38:03 CST)
- Re: AMBER: inconsistent ordering in an improper dihedral of TRP David A. Case (Fri Feb 11 2005 - 16:19:03 CST)
- Re: AMBER: inconsistent ordering in an improper dihedral of TRP Bill Ross (Fri Feb 11 2005 - 19:56:10 CST)
- AMBER: Re: inconsistent ordering in an improper dihedral of TRP Sanghyun Park (Thu Mar 10 2005 - 21:08:25 CST)
- AMBER: correlation along PCA modes Vlad Cojocaru (Mon Feb 07 2005 - 05:35:44 CST)
- Re: AMBER: Creating an input file for GRASP using AMBER 8 Bill Ross (Mon Feb 07 2005 - 13:40:33 CST)
- AMBER: problem in writing Gustavo Pierdominici Sottile (Mon Feb 07 2005 - 13:59:49 CST)
- AMBER: How to calculate RESTRAINT value Mayumi Haga (Mon Feb 07 2005 - 22:09:25 CST)
- AMBER: dynamics error S.Sundar Raman (Tue Feb 08 2005 - 05:10:19 CST)
- AMBER: MMGBSA and dielectric constant with AMBER8 - dielc and intdiel Fabien Cailliez (Tue Feb 08 2005 - 11:16:51 CST)
- AMBER: problem in minimization Gustavo Pierdominici Sottile (Tue Feb 08 2005 - 12:31:17 CST)
- AMBER: Minimization Beale, John (Tue Feb 08 2005 - 13:30:52 CST)
- AMBER: Linux Enterprise Beale, John (Tue Feb 08 2005 - 13:39:54 CST)
- AMBER: Amber8 installation test possible failures Joe Nolan (Tue Feb 08 2005 - 13:55:39 CST)
- AMBER: leap bond angle building Stern, Julie (Tue Feb 08 2005 - 17:44:39 CST)
- Re: AMBER: leap bond angle building Bill Ross (Tue Feb 08 2005 - 18:00:12 CST)
- AMBER: minimize a ptraj average pdb structure Eric Hu (Tue Feb 08 2005 - 19:48:26 CST)
- AMBER: energy plot in minimization Gustavo Pierdominici Sottile (Wed Feb 09 2005 - 11:36:25 CST)
- AMBER: question about mm_gbsa output file michael chen (Wed Feb 09 2005 - 12:10:06 CST)
- AMBER: Convert to Pdb Beale, John (Wed Feb 09 2005 - 13:03:27 CST)
- AMBER: minimization.out Gustavo Pierdominici Sottile (Wed Feb 09 2005 - 13:32:01 CST)
- AMBER: DIVCON optimization Kara Di Giorgio (Wed Feb 09 2005 - 13:46:03 CST)
- AMBER: Can REM be used as multiple normal sander jobs on parallel machine qlu_at_notes.cc.sunysb.edu (Wed Feb 09 2005 - 17:15:59 CST)
- AMBER: desc NEWRES and blank unit type Stern, Julie (Wed Feb 09 2005 - 20:07:00 CST)
- AMBER: Another question about surface area calculation michael chen (Thu Feb 10 2005 - 00:26:00 CST)
- AMBER: question about surface area to GBsurf calculation michael chen (Thu Feb 10 2005 - 00:20:58 CST)
- AMBER: Poisson Boltzmann dynamics error Rachel Burdge (Thu Feb 10 2005 - 10:04:55 CST)
- AMBER: Protonate state of ARG and LYS. Liu, Jingyuan (Thu Feb 10 2005 - 15:56:39 CST)
- AMBER: How to converts a binary mdcrd file thanyarat Udom (Fri Feb 11 2005 - 01:02:21 CST)
- AMBER: How to converts a binary mdcrd file thanyarat Udom (Fri Feb 11 2005 - 02:00:10 CST)
- AMBER: Cu++ and RED Cenk Andac (Fri Feb 11 2005 - 03:46:13 CST)
- Re: AMBER: Cu++ and RED FyD (Fri Feb 11 2005 - 11:23:53 CST)
- Re: AMBER: Cu++ and RED Cenk Andac (Sat Mar 12 2005 - 06:28:34 CST)
- Re: AMBER: Cu++ and RED FyD (Sat Mar 12 2005 - 11:35:53 CST)
- Modification of GAMESS outputs for resp jobs Re: AMBER: Cu++ and RED Cenk Andac (Sat Oct 22 2005 - 13:02:00 CDT)
- AMBER: Problem with the QMMM example in AMBER 2004 tutorial Cenk Andac (Sun Oct 23 2005 - 11:31:45 CDT)
- RE: AMBER: Problem with the QMMM example in AMBER 2004 tutorial Ross Walker (Sun Oct 23 2005 - 12:02:55 CDT)
- Re: Modification of GAMESS outputs for resp jobs Re: AMBER: Cu++ and RED FyD (Mon Oct 24 2005 - 03:44:31 CDT)
- Re: Modification of GAMESS outputs for resp jobs Re: AMBER: Cu++ and RED Cenk Andac (Mon Oct 24 2005 - 11:12:30 CDT)
- Re: Modification of GAMESS outputs for resp jobs Re: AMBER: Cu++ and RED Cenk Andac (Mon Oct 24 2005 - 11:43:36 CDT)
- Re: Modification of GAMESS outputs for resp jobs Re: AMBER: Cu++ and RED FyD (Tue Oct 25 2005 - 00:58:56 CDT)
- Re: AMBER: Cu++ and RED FyD (Sat Mar 12 2005 - 11:35:53 CST)
- Re:Re: AMBER: Cu++ and RED Cenk Andac (Sat Mar 12 2005 - 12:39:10 CST)
- AMBER: too much vacuum in the box created by Leap Marie-Pierre Durrieu (Fri Feb 11 2005 - 06:53:35 CST)
- AMBER: ptraj error and min problems Gustavo Pierdominici Sottile (Fri Feb 11 2005 - 08:54:23 CST)
- AMBER: archive Gustavo Pierdominici Sottile (Fri Feb 11 2005 - 08:58:33 CST)
- AMBER: reverse TI charge perturbation Eric Hu (Fri Feb 11 2005 - 19:59:10 CST)
- AMBER: S.Sundar Raman (Mon Feb 14 2005 - 03:03:27 CST)
- AMBER:how to analyse trajectory files S.Sundar Raman (Mon Feb 14 2005 - 03:17:39 CST)
- AMBER: vlimit Gustavo Pierdominici Sottile (Mon Feb 14 2005 - 06:23:31 CST)
- AMBER: AMBER 8 : Water cap problem Guillaume Bollot (Mon Feb 14 2005 - 07:14:20 CST)
- AMBER: constrains Gustavo Pierdominici Sottile (Mon Feb 14 2005 - 08:53:18 CST)
- AMBER: Restart Problem opitz_at_che.udel.edu (Mon Feb 14 2005 - 13:12:54 CST)
- AMBER: Mainchain example needed Kara Wald (Mon Feb 14 2005 - 15:43:06 CST)
- AMBER: running shell scripts in tleap? Cenk Andac (Mon Feb 14 2005 - 16:23:44 CST)
- RE: AMBER: running shell scripts in tleap? Ross Walker (Mon Feb 14 2005 - 17:31:03 CST)
- Re: AMBER: running shell scripts in tleap? Lihua Wang (Mon Feb 14 2005 - 17:26:31 CST)
- Re: AMBER: running shell scripts in tleap? John Bushnell (Mon Feb 14 2005 - 17:32:32 CST)
- AMBER: Dummy Atom Types on both states Ilyas Yildirim (Mon Feb 14 2005 - 20:29:03 CST)
- Re: AMBER: Dummy Atom Types on both states Thomas Steinbrecher (Tue Feb 15 2005 - 03:04:06 CST)
- Re: AMBER: Dummy Atom Types on both states yipinl_at_umich.edu (Tue Feb 15 2005 - 09:31:56 CST)
- Re: AMBER: Dummy Atom Types on both states Julien Michel (Tue Feb 15 2005 - 10:10:34 CST)
- Re: AMBER: Dummy Atom Types on both states david.evans_at_ulsop.ac.uk (Tue Feb 15 2005 - 11:29:39 CST)
- Re: AMBER: Dummy Atom Types on both states david.evans_at_ulsop.ac.uk (Tue Feb 15 2005 - 12:13:57 CST)
- Re: AMBER: Dummy Atom Types on both states David A. Case (Tue Feb 15 2005 - 16:26:21 CST)
- AMBER: soft-cores and Amber David A. Case (Tue Feb 15 2005 - 16:55:30 CST)
- Re: AMBER: soft-cores and Amber Carlos Simmerling (Tue Feb 15 2005 - 17:11:14 CST)
- Re: AMBER: Dummy Atom Types on both states Thomas Steinbrecher (Tue Feb 15 2005 - 03:04:06 CST)
- AMBER: Topology Format Amber 8 Stuart Murdock (Tue Feb 15 2005 - 06:00:56 CST)
- AMBER: problems with running sander in parallel on linux Piotr Cieplak (Tue Feb 15 2005 - 12:28:02 CST)
- RE: AMBER: problems with running sander in parallel on linux Ross Walker (Tue Feb 15 2005 - 12:50:53 CST)
- Re: AMBER: problems with running sander in parallel on linux Robert Duke (Tue Feb 15 2005 - 13:43:37 CST)
- Re: AMBER: problems with running sander in parallel on linux Scott Brozell (Tue Feb 15 2005 - 15:01:21 CST)
- Re: AMBER: problems with running sander in parallel on linux Robert Duke (Tue Feb 15 2005 - 15:25:52 CST)
- Re: AMBER: problems with running sander in parallel on linux Scott Brozell (Tue Feb 15 2005 - 16:02:56 CST)
- Re: AMBER: problems with running sander in parallel on linux Piotr Cieplak (Tue Feb 15 2005 - 15:58:09 CST)
- Re: AMBER: problems with running sander in parallel on linux Robert Duke (Tue Feb 15 2005 - 13:43:37 CST)
- RE: AMBER: problems with running sander in parallel on linux Piotr Cieplak (Tue Feb 15 2005 - 13:01:15 CST)
- Re: AMBER: problems with running sander in parallel on linux Scott Brozell (Tue Feb 15 2005 - 13:42:45 CST)
- Re: AMBER: problems with running sander in parallel on linux David E. Konerding DSD staff (Tue Feb 15 2005 - 14:48:50 CST)
- RE: AMBER: problems with running sander in parallel on linux Ross Walker (Tue Feb 15 2005 - 12:50:53 CST)
- AMBER: blows up Gustavo Pierdominici Sottile (Tue Feb 15 2005 - 13:11:43 CST)
- AMBER: check in leap Gustavo Pierdominici Sottile (Tue Feb 15 2005 - 13:34:21 CST)
- AMBER: Cyclic peptide arubin_at_unmc.edu (Tue Feb 15 2005 - 15:12:28 CST)
- AMBER: PDB conversion to gzmat using antechamber Scott Pendley (Tue Feb 15 2005 - 17:32:21 CST)
- AMBER: EWALD and belly not strictly correct Stern, Julie (Tue Feb 15 2005 - 23:41:49 CST)
- AMBER: Why I couldnt used carnal for analyzed RMSD ? thanyarat Udom (Wed Feb 16 2005 - 03:28:17 CST)
- AMBER: Gustavo Pierdominici Sottile (Wed Feb 16 2005 - 06:22:59 CST)
- AMBER: rms Gustavo Pierdominici Sottile (Wed Feb 16 2005 - 07:14:50 CST)
- AMBER: Beale, John (Wed Feb 16 2005 - 07:42:26 CST)
- AMBER: Phi-Psi-Energy plot L Jin (Wed Feb 16 2005 - 09:45:18 CST)
- AMBER: generate charmm paramater file from amber parm file HL Eastwood (Wed Feb 16 2005 - 11:19:56 CST)
- Re: AMBER: Why I couldnt used carnal for analyzed RMSD ? Bill Ross (Wed Feb 16 2005 - 12:19:30 CST)
- AMBER: Amber7 nmropt Markus W. Germann (Wed Feb 16 2005 - 15:09:08 CST)
- AMBER: installation of amber 8 on windows anshul_at_imtech.res.in (Thu Feb 17 2005 - 14:17:11 CST)
- AMBER: Re: pmemd problems Robert Duke (Thu Feb 17 2005 - 09:15:33 CST)
- AMBER: rotameric populations? Cenk Andac (Thu Feb 17 2005 - 09:15:05 CST)
- AMBER: moil-view Beale, John (Thu Feb 17 2005 - 09:56:30 CST)
- AMBER: Antechamber help needed Kara Di Giorgio (Thu Feb 17 2005 - 11:24:34 CST)
- AMBER: Moil view trajectory clusters Austin B. Yongye (Thu Feb 17 2005 - 11:36:15 CST)
- AMBER: problem with ptraj and randomizeions Fabien Cailliez (Thu Feb 17 2005 - 11:56:24 CST)
- AMBER: PSC Summer Workshop: Modeling Proteins and Nucleic Acids with AMBER, VMD and the MMTSB Toolkit Troy Wymore (Thu Feb 17 2005 - 13:00:36 CST)
- AMBER: amber8 and moil-view Lihua Wang (Thu Feb 17 2005 - 13:26:32 CST)
- AMBER: Amber8 Solaris installation failure Joe Nolan (Thu Feb 17 2005 - 14:27:12 CST)
- Re: AMBER: Amber8 Solaris installation failure David A. Case (Thu Feb 17 2005 - 20:31:00 CST)
- Re: AMBER: Amber8 Solaris installation failure Joe Nolan (Tue Feb 22 2005 - 14:12:02 CST)
- Re: AMBER: Amber8 Solaris installation failure Atro Tossavainen (Tue Feb 22 2005 - 14:19:31 CST)
- Re: AMBER: Amber8 Solaris installation failure Joe Nolan (Tue Feb 22 2005 - 17:34:50 CST)
- RE: AMBER: Amber8 Solaris installation failure Ross Walker (Tue Feb 22 2005 - 17:55:17 CST)
- Re: AMBER: Amber8 Solaris installation failure David A. Case (Tue Feb 22 2005 - 18:52:13 CST)
- Re: AMBER: Amber8 Solaris installation failure M. L. Dodson (Tue Feb 22 2005 - 20:33:31 CST)
- Re: AMBER: Amber8 Solaris installation failure Joe Nolan (Mon Feb 28 2005 - 14:24:28 CST)
- Re: AMBER: Amber8 Solaris installation failure M. L. Dodson (Mon Feb 28 2005 - 14:55:47 CST)
- Re: AMBER: Amber8 Solaris installation failure David A. Case (Mon Feb 28 2005 - 16:42:21 CST)
- Re: AMBER: Amber8 Solaris installation failure Joe Nolan (Tue Mar 01 2005 - 09:23:06 CST)
- Re: AMBER: Amber8 Solaris installation failure Joe Nolan (Tue Feb 22 2005 - 14:12:02 CST)
- RE: AMBER: Amber8 Solaris installation failure Bill Ross (Tue Feb 22 2005 - 18:08:37 CST)
- Re: AMBER: Amber8 Solaris installation failure David A. Case (Thu Feb 17 2005 - 20:31:00 CST)
- AMBER: sander errors with atom restraints on ia64 Rachel Burdge (Thu Feb 17 2005 - 15:46:04 CST)
- AMBER: leap saveamberparm chain types response Stern, Julie (Thu Feb 17 2005 - 17:16:50 CST)
- AMBER: Compiling/Runing on BSD - emulation and/or gfortran (Linux and BSD) Greg Recine (Thu Feb 17 2005 - 18:23:01 CST)
- Re: AMBER: leap saveamberparm chain types response Bill Ross (Thu Feb 17 2005 - 19:15:20 CST)
- AMBER: GB solvation and "boxed" environment simulation Soo (Thu Feb 17 2005 - 23:32:38 CST)
- AMBER: molecule blowing apart during equilibration Stern, Julie (Fri Feb 18 2005 - 01:12:16 CST)
- AMBER: ptraj Gustavo Pierdominici Sottile (Fri Feb 18 2005 - 08:58:37 CST)
- AMBER: XMGR Beale, John (Fri Feb 18 2005 - 12:20:44 CST)
- AMBER: DNA Tutorial Dwayne Hoobler (Fri Feb 18 2005 - 17:07:34 CST)
- AMBER: Amber: sander error segmentation fault. S.Sundar Raman (Sat Feb 19 2005 - 00:03:50 CST)
- AMBER: ptraj for RDF calculations Javier Perez Miron (Sat Feb 19 2005 - 10:47:02 CST)
- AMBER: simulation with explicit water molecules Ye MEI (Sat Feb 19 2005 - 21:24:48 CST)
- AMBER: (no subject) yen li (Sun Feb 20 2005 - 12:16:32 CST)
- AMBER: AIX problem Mayumi Haga (Sun Feb 20 2005 - 23:17:29 CST)
- AMBER: ptraj for RDF calculations Javier Perez Miron (Mon Feb 21 2005 - 02:42:33 CST)
- AMBER: Amber 8 with lam compilation problem m m (Mon Feb 21 2005 - 02:55:49 CST)
- AMBER: problem with protein minimization yen li (Mon Feb 21 2005 - 03:12:02 CST)
- AMBER: separate solvent-solvent and solvent-solute interaction Ye MEI (Mon Feb 21 2005 - 06:44:22 CST)
- AMBER: Formatting Questions Kara Di Giorgio (Mon Feb 21 2005 - 13:09:44 CST)
- AMBER: Free energy extimate for the same structure but different conformers claudio (Mon Feb 21 2005 - 14:56:10 CST)
- AMBER: ptraj problem Mayumi Haga (Tue Feb 22 2005 - 03:38:43 CST)
- AMBER: restraint only for Z cartegian coordinate? Jaroslav Hanus (Tue Feb 22 2005 - 09:40:58 CST)
- AMBER: Restraint of atoms during minimization L Jin (Tue Feb 22 2005 - 10:17:05 CST)
- Re: AMBER: Restraint of atoms during minimization Carlos Simmerling (Tue Feb 22 2005 - 10:34:06 CST)
- Re: AMBER: Restraint of atoms during minimization L Jin (Tue Feb 22 2005 - 11:12:13 CST)
- Re: AMBER: Restraint of atoms during minimization David A. Case (Tue Feb 22 2005 - 11:19:17 CST)
- Re: AMBER: Restraint of atoms during minimization Carlos Simmerling (Tue Feb 22 2005 - 11:28:01 CST)
- Re: AMBER: Restraint of atoms during minimization Thomas E. Cheatham, III (Tue Feb 22 2005 - 11:36:42 CST)
- Re: AMBER: Restraint of atoms during minimization L Jin (Tue Feb 22 2005 - 11:12:13 CST)
- Re: AMBER: Restraint of atoms during minimization Carlos Simmerling (Tue Feb 22 2005 - 10:34:06 CST)
- AMBER: dihedral driver? Beale, John (Tue Feb 22 2005 - 10:26:26 CST)
- AMBER: vlimit exceeded and temperature blow up Stern, Julie (Tue Feb 22 2005 - 10:36:05 CST)
- AMBER: MPI for sander8 S. Frank Yan (Tue Feb 22 2005 - 11:04:56 CST)
- AMBER: ptraj8: trajectory windows Anselm Horn (Tue Feb 22 2005 - 11:16:13 CST)
- AMBER: lastrst Stern, Julie (Tue Feb 22 2005 - 17:06:24 CST)
- AMBER: minimizing structures before MM-PBSA? scopio (Tue Feb 22 2005 - 19:23:37 CST)
- AMBER: lastrst Stern, Julie (Tue Feb 22 2005 - 19:21:00 CST)
- AMBER: convert one functional group to another with TI Eric Hu (Tue Feb 22 2005 - 19:29:42 CST)
- Re: AMBER: convert one functional group to another with TI David A. Case (Tue Feb 22 2005 - 23:44:41 CST)
- Re: AMBER: convert one functional group to another with TI Eric Hu (Wed Feb 23 2005 - 00:36:03 CST)
- Re: AMBER: convert one functional group to another with TI David A. Case (Wed Feb 23 2005 - 16:46:55 CST)
- Re: AMBER: convert one functional group to another with TI David A. Case (Wed Feb 23 2005 - 17:01:42 CST)
- AMBER: Does delta.charge mean "final charge" for a dummy atom? Eric Hu (Thu Feb 24 2005 - 19:22:23 CST)
- Re: AMBER: Does delta.charge mean "final charge" for a dummy atom? David A. Case (Thu Feb 24 2005 - 20:31:04 CST)
- Re: AMBER: Does delta.charge mean "final charge" for a dummy atom? Eric Hu (Fri Feb 25 2005 - 18:38:05 CST)
- Re: AMBER: convert one functional group to another with TI Eric Hu (Wed Feb 23 2005 - 17:18:29 CST)
- Re: AMBER: convert one functional group to another with TI Eric Hu (Wed Feb 23 2005 - 00:36:03 CST)
- Re: AMBER: convert one functional group to another with TI David A. Case (Tue Feb 22 2005 - 23:44:41 CST)
- AMBER: total energy of solvation Holly Freedman (Tue Feb 22 2005 - 22:05:36 CST)
- AMBER: size of solventbox mathew k varghese (Tue Feb 22 2005 - 22:07:00 CST)
- AMBER: parallel AMBER/pmemd installation problem on Opteron Jyh-Shyong Ho (Tue Feb 22 2005 - 23:08:22 CST)
- RE: AMBER: size of solventbox Ross Walker (Tue Feb 22 2005 - 23:22:03 CST)
- Re: AMBER: size of solventbox Germán Sciaini (Wed Feb 23 2005 - 04:50:39 CST)
- AMBER: mpirun sander8 problem S. Frank Yan (Wed Feb 23 2005 - 01:13:34 CST)
- Re: AMBER: mpirun sander8 problem Carlos Simmerling (Wed Feb 23 2005 - 07:05:01 CST)
- RE: AMBER: mpirun sander8 problem S. Frank Yan (Wed Feb 23 2005 - 10:58:08 CST)
- FW: AMBER: mpirun sander8 problem S. Frank Yan (Thu Feb 24 2005 - 02:41:14 CST)
- Re: AMBER: mpirun sander8 problem S. Frank Yan (Thu Feb 24 2005 - 10:30:23 CST)
- AMBER: RE:Amber 8 with lam compilation problem Maciej KA (Wed Feb 23 2005 - 02:07:37 CST)
- Re: AMBER: lastrst Stern, Julie (Wed Feb 23 2005 - 15:03:57 CST)
- AMBER: classes Gustavo Pierdominici Sottile (Wed Feb 23 2005 - 15:00:47 CST)
- AMBER: solvateOct method Cameron Mura (Wed Feb 23 2005 - 20:26:19 CST)
- Re: AMBER: Use of ibelly with nmode analysis marti (Thu Feb 24 2005 - 05:47:28 CST)
- AMBER: How to build dynamics input for guanine with tleap ? Maciej (Thu Feb 24 2005 - 07:44:37 CST)
- AMBER: Joining residues/units Bogos Agianian (Thu Feb 24 2005 - 08:58:55 CST)
- AMBER: cross-correlation Xin Hu (Thu Feb 24 2005 - 10:40:54 CST)
- AMBER: ambpdb radii Harianto (Thu Feb 24 2005 - 13:24:39 CST)
- AMBER: units describing projection onto modes Vlad Cojocaru (Thu Feb 24 2005 - 12:40:18 CST)
- AMBER: correlation Gustavo Pierdominici Sottile (Thu Feb 24 2005 - 13:48:50 CST)
- Re: AMBER: correlation David A. Case (Mon Feb 28 2005 - 11:32:54 CST)
- AMBER: MM_PBSA error Xin Hu (Mon Apr 11 2005 - 13:46:30 CDT)
- Re: AMBER: MM_PBSA error Holger Gohlke (Mon Apr 11 2005 - 15:49:37 CDT)
- Re: AMBER: MM_PBSA error Xin Hu (Mon Apr 11 2005 - 17:33:51 CDT)
- Re: AMBER: MM_PBSA error Holger Gohlke (Tue Apr 12 2005 - 01:30:24 CDT)
- AMBER: MM_PBSA problem Xin Hu (Tue Apr 12 2005 - 11:09:36 CDT)
- Re: AMBER: MM_PBSA problem Nelson Fonseca (Tue Apr 12 2005 - 11:20:53 CDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Tue Apr 12 2005 - 14:36:07 CDT)
- Re: AMBER: MM_PBSA problem Nelson Fonseca (Tue Apr 12 2005 - 16:15:00 CDT)
- Re: AMBER: MM_PBSA problem David A. Case (Wed Apr 13 2005 - 10:23:17 CDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Wed Apr 13 2005 - 12:49:05 CDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Wed Apr 13 2005 - 10:28:17 CDT)
- Re: AMBER: MM_PBSA problem Fabien Cailliez (Tue Apr 12 2005 - 11:50:14 CDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Tue Apr 12 2005 - 14:31:45 CDT)
- Re: AMBER: MM_PBSA problem Magne Olufsen (Fri Nov 04 2005 - 01:50:30 CST)
- Re: AMBER: MM_PBSA problem haixiao jin (Fri Nov 04 2005 - 02:58:14 CST)
- Re: AMBER: MM_PBSA problem Scott Pendley (Fri Nov 04 2005 - 12:18:17 CST)
- Re: AMBER: MM_PBSA problem haixiao jin (Mon Nov 07 2005 - 02:59:27 CST)
- Re: AMBER: MM_PBSA error Holger Gohlke (Mon Apr 11 2005 - 15:49:37 CDT)
- AMBER: pmemd + pgi 5.1 + ntr = 1 Peter Varnai (Thu Feb 24 2005 - 16:25:04 CST)
- AMBER: My last posting Robert Duke (Thu Feb 24 2005 - 22:15:08 CST)
- AMBER: compile amber8 on RHEL4 HuiZhe Li (Fri Feb 25 2005 - 01:59:02 CST)
- AMBER: nmode entropy calculations in MMPBSA Fabien Cailliez (Fri Feb 25 2005 - 04:20:23 CST)
- AMBER: vlimit Gustavo Pierdominici Sottile (Fri Feb 25 2005 - 06:45:35 CST)
- AMBER: make test.lmod error yuann (Fri Feb 25 2005 - 10:45:11 CST)
- AMBER: setBox buffer in leap Stern, Julie (Fri Feb 25 2005 - 12:43:19 CST)
- AMBER: problem with solvateBox ReichertD_at_mir.wustl.edu (Fri Feb 25 2005 - 14:38:51 CST)
- AMBER: Austin B. Yongye (Fri Feb 25 2005 - 15:43:56 CST)
- AMBER: ico(i)=-1? Xiao He (Fri Feb 25 2005 - 21:49:46 CST)
- AMBER: Amber Poisson-Boltzmann MD :Equilibration Problem praveena moldy (Sun Feb 27 2005 - 23:36:36 CST)
- AMBER: GBSA calculation Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) (Mon Feb 28 2005 - 04:59:23 CST)
- AMBER: creating a new residue Amber admin (Mon Feb 28 2005 - 10:44:59 CST)
- AMBER: An error during minimization using RED tomjas_at_poczta.onet.pl (Tue Mar 01 2005 - 01:18:55 CST)
- AMBER: Controlling number of water residues... Pavan G (Tue Mar 01 2005 - 01:14:51 CST)
- AMBER: problem with MD simulation Ye Mei (Tue Mar 01 2005 - 02:00:31 CST)
- AMBER: NaNQ ilaria massarelli (Tue Mar 01 2005 - 02:45:10 CST)
- AMBER: Dihedral Energy calculation yen li (Tue Mar 01 2005 - 12:12:56 CST)
- RE: AMBER: Dihedral Energy calculation Junmei Wang (Tue Mar 01 2005 - 12:57:49 CST)
- AMBER: MM-GBSA Alessio Coi (Wed Mar 02 2005 - 04:00:52 CST)
- RE: AMBER: Dihedral Energy calculation yen li (Fri Mar 04 2005 - 15:29:08 CST)
- AMBER: PMEMD on Opterons; building/benchmarks/recommendations Robert Duke (Tue Mar 01 2005 - 13:14:56 CST)
- AMBER: Xleap execution problems on Solaris Joe Nolan (Tue Mar 01 2005 - 14:51:26 CST)
- AMBER: RESP of negatively charged molecule Rhoad, Jonathan S. (Tue Mar 01 2005 - 15:39:05 CST)
- AMBER: Sample more conformational space Bogos Agianian (Wed Mar 02 2005 - 06:52:49 CST)
- AMBER: bond type for a virtual bond in a biomolecular transition state Eric Hu (Wed Mar 02 2005 - 16:54:45 CST)
- AMBER: Installation problem S.Sundar Raman (Thu Mar 03 2005 - 00:28:29 CST)
- AMBER: Amber 8 on cygwin install problem Maciej (Thu Mar 03 2005 - 04:49:17 CST)
- AMBER: phosphorylated DNA not recognized Annette Höglund (Thu Mar 03 2005 - 08:55:18 CST)
- AMBER: bond connectivity among dummy atoms Eric Hu (Thu Mar 03 2005 - 12:56:32 CST)
- AMBER: A problem about Gaussian Yanze Zhang (Thu Mar 03 2005 - 16:38:59 CST)
- Re: AMBER: A problem about Gaussian FyD (Thu Mar 03 2005 - 17:27:23 CST)
- AMBER: Dummy atoms: Changing the source code Ilyas Yildirim (Thu Mar 03 2005 - 18:24:03 CST)
- Re: AMBER: Dummy atoms: Changing the source code Julien Michel (Fri Mar 04 2005 - 03:44:31 CST)
- Re: AMBER: Dummy atoms: Changing the source code Ilyas Yildirim (Fri Mar 04 2005 - 20:56:34 CST)
- Re: AMBER: Dummy atoms: Changing the source code David A. Case (Tue Mar 08 2005 - 13:50:58 CST)
- Re: AMBER: Dummy atoms: Changing the source code Ilyas Yildirim (Tue Mar 08 2005 - 14:56:48 CST)
- AMBER: Dummy atoms: Changing the source code Ilyas Yildirim (Thu Mar 03 2005 - 18:24:03 CST)
- Re: AMBER: A problem about Gaussian David A. Case (Thu Mar 03 2005 - 18:55:35 CST)
- Re: AMBER: A problem about Gaussian FyD (Thu Mar 03 2005 - 17:27:23 CST)
- AMBER: Antechamber/Divcon assigned charges Marc Christensen (Thu Mar 03 2005 - 21:38:10 CST)
- AMBER: atom type designation Lihua Wang (Fri Mar 04 2005 - 18:05:10 CST)
- AMBER: R.E.D Wai Keat Yam (Sat Mar 05 2005 - 23:14:49 CST)
- Re: AMBER: R.E.D Piotr Cieplak (Sun Mar 06 2005 - 18:20:42 CST)
- AMBER: Citing Generalized Born Implicit solvent Model (igb=5) Cenk Andac (Sun Mar 06 2005 - 18:57:21 CST)
- AMBER: AMBER8 Compile Error on Dual Opteron Thomas Patko (Sun Mar 06 2005 - 19:53:46 CST)
- AMBER: amber with mpich-G2 putra abdullah (Sun Mar 06 2005 - 20:55:44 CST)
- AMBER: A problem about removing waters and counterions by ptraj scopio (Mon Mar 07 2005 - 06:28:19 CST)
- AMBER: New pmemd build utility; pathscale vs. pgi vs. ifort em64 opteron benchmarks Robert Duke (Mon Mar 07 2005 - 10:47:02 CST)
- AMBER: What PRESS is? hj zou (Mon Mar 07 2005 - 21:08:39 CST)
- AMBER: global pH variation in AMBER. Osman Gani (Tue Mar 08 2005 - 04:56:06 CST)
- AMBER: Error limits of TI and MM_PBSA methods Nelson Fonseca (Tue Mar 08 2005 - 10:54:42 CST)
- AMBER: Energy fluctuations David.LeBard_at_asu.edu (Tue Mar 08 2005 - 11:40:46 CST)
- AMBER: radii "leap" from which file xhu1_at_memphis.edu (Tue Mar 08 2005 - 13:34:48 CST)
- AMBER: Sander questions on dual-processor Sun with MPICH Joe Nolan (Tue Mar 08 2005 - 14:37:50 CST)
- RE: AMBER: Sander questions on dual-processor Sun with MPICH Ross Walker (Tue Mar 08 2005 - 19:50:55 CST)
- Re: AMBER: Sander questions on dual-processor Sun with MPICH Robert Duke (Wed Mar 09 2005 - 07:41:08 CST)
- Re: AMBER: Sander questions on dual-processor Sun with MPICH Joe Nolan (Thu Mar 10 2005 - 10:46:23 CST)
- AMBER: X Windows for LEaP on SGI Akshay Patny (Tue Mar 08 2005 - 15:07:44 CST)
- AMBER: capping? Hui-Hsu Tsai (Tue Mar 08 2005 - 15:34:59 CST)
- Re: AMBER: radii "leap" from which file Bill Ross (Tue Mar 08 2005 - 15:43:18 CST)
- AMBER: heating Gustavo Pierdominici Sottile (Tue Mar 08 2005 - 16:20:34 CST)
- Re: AMBER: heating Bill Ross (Tue Mar 08 2005 - 16:55:47 CST)
- AMBER: The pressure bybaker_at_itsa.ucsf.edu (Tue Mar 08 2005 - 19:54:44 CST)
- AMBER: how can I deal with the puzzle? hj zou (Tue Mar 08 2005 - 21:36:39 CST)
- AMBER: Problems Binding Protein to DNA Pieter Smith (Tue Mar 08 2005 - 23:21:30 CST)
- AMBER: amber on sgi mathew k varghese (Wed Mar 09 2005 - 05:23:12 CST)
- AMBER: For further question about Targeted MD ZhangJian (Wed Mar 09 2005 - 06:48:44 CST)
- AMBER: vlimit in heating Gustavo Pierdominici Sottile (Wed Mar 09 2005 - 08:13:20 CST)
- Re: AMBER: vlimit in heating Bill Ross (Wed Mar 09 2005 - 09:44:06 CST)
- AMBER: solvatebox problem in the antechamber tutorial Heiko Meyer (Wed Mar 09 2005 - 10:29:00 CST)
- AMBER: vlimit heat Gustavo Pierdominici Sottile (Wed Mar 09 2005 - 11:36:30 CST)
- AMBER: Re: Amber 8 dual-Xeon compile problem keiodai_at_shohoku.ac.jp (Wed Mar 09 2005 - 22:14:33 CST)
- AMBER: how to excite a single residue ? Priti Hansia (Wed Mar 09 2005 - 22:28:24 CST)
- AMBER: PTRAJ $ Antechamber Andrew Box (Thu Mar 10 2005 - 00:47:29 CST)
- AMBER: Sander error Vojtěch Klusák (Thu Mar 10 2005 - 06:03:21 CST)
- Re: AMBER: PTRAJ $ Antechamber Bill Ross (Thu Mar 10 2005 - 11:22:39 CST)
- AMBER: expected error in mean (Amber 8 TI tutorial) Eric Hu (Thu Mar 10 2005 - 17:38:13 CST)
- AMBER: IDIEL in sander sebnem (Fri Mar 11 2005 - 01:14:50 CST)
- AMBER: vlimit Gustavo Pierdominici Sottile (Fri Mar 11 2005 - 06:33:36 CST)
- AMBER: Holes in water Lukasz Bielecki (Fri Mar 11 2005 - 08:13:40 CST)
- AMBER: problem with nmode using ntrun=5 Phineus Markwick (Fri Mar 11 2005 - 08:38:34 CST)
- Re: AMBER: Re: inconsistent ordering in an improper dihedral of TRP Bill Ross (Fri Mar 11 2005 - 09:46:40 CST)
- Re: Re :AMBER: Holes in water Bill Ross (Fri Mar 11 2005 - 09:59:03 CST)
- AMBER: problem with nmode using ntrun=5 (2) Phineus Markwick (Fri Mar 11 2005 - 10:39:43 CST)
- AMBER: ptraj xueping (Fri Mar 11 2005 - 22:56:29 CST)
- AMBER: Amber PBMD:Energy fluctuation Praveena Gopal (Sat Mar 12 2005 - 03:48:03 CST)
- AMBER: spherical boundary condition Hui-Hsu Tsai (Sat Mar 12 2005 - 13:05:52 CST)
- AMBER: mesure dihedral angle during MD julien (Sun Mar 13 2005 - 10:52:01 CST)
- AMBER: gyration radius julien (Sun Mar 13 2005 - 10:49:50 CST)
- Re: AMBER: gyration radius Bill Ross (Sun Mar 13 2005 - 13:36:15 CST)
- AMBER: leap warnings mathew k varghese (Mon Mar 14 2005 - 00:34:32 CST)
- AMBER: surfen and surfoff Giulio Rastelli (Mon Mar 14 2005 - 10:21:22 CST)
- AMBER: RDF input preparation problem Maciej (Sun Mar 13 2005 - 22:12:22 CST)
- AMBER: Xserve and amber Markus W. Germann (Mon Mar 14 2005 - 10:55:53 CST)
- AMBER: Geometrical distortion because of charge? peng79_at_email.unc.edu (Mon Mar 14 2005 - 12:21:28 CST)
- AMBER: Question about radial command in ptraj opitz_at_che.udel.edu (Mon Mar 14 2005 - 13:19:11 CST)
- Re: AMBER: Question about radial command in ptraj Bill Ross (Mon Mar 14 2005 - 13:48:17 CST)
- AMBER: antechamber and multiplicity Cenk Andac (Mon Mar 14 2005 - 13:57:27 CST)
- AMBER: determining solvent/ion densities Joseph W.Toporowski (Mon Mar 14 2005 - 17:35:25 CST)
- AMBER: Hydrogen bonding question opitz_at_che.udel.edu (Tue Mar 15 2005 - 08:57:45 CST)
- AMBER: Problem saving file in xleap aanzellotti_at_mail2.vcu.edu (Tue Mar 15 2005 - 11:03:12 CST)
- AMBER: Sander: idecomp lei jia (Tue Mar 15 2005 - 13:45:47 CST)
- AMBER: frcmod.mod_phipsi.2 bybaker_at_itsa.ucsf.edu (Tue Mar 15 2005 - 14:04:31 CST)
- AMBER: in vacuo parameters Stern, Julie (Tue Mar 15 2005 - 17:14:44 CST)
- AMBER: Bio-Image summer school in Paris this year Marc Baaden (Wed Mar 16 2005 - 05:44:47 CST)
- AMBER: restraintmask dimension Piero Altoč (Wed Mar 16 2005 - 05:42:12 CST)
- AMBER: Velocity Info Vineet Pande (Wed Mar 16 2005 - 08:08:42 CST)
- AMBER: "personality" of Amber force field Hui-Hsu Tsai (Wed Mar 16 2005 - 10:01:00 CST)
- AMBER: question about amber parameter file format etc. jz7_at_duke.edu (Wed Mar 16 2005 - 11:37:29 CST)
- AMBER: periodicity problem Stern, Julie (Wed Mar 16 2005 - 15:02:28 CST)
- AMBER: Zn complex parametrization question Ashutosh Suhas Jogalekar (Wed Mar 16 2005 - 15:27:38 CST)
- Re: AMBER: periodicity problem Bill Ross (Wed Mar 16 2005 - 16:23:03 CST)
- AMBER: sander.QMMM and fcap Claudio Morgado (Thu Mar 17 2005 - 07:56:34 CST)
- AMBER: van der Waals interactions (PTRAJ) Vineet Pande (Thu Mar 17 2005 - 08:07:12 CST)
- AMBER: Minimization of avg structure-SANDER Bomb Vineet Pande (Thu Mar 17 2005 - 08:50:03 CST)
- AMBER: Bus error - ambpdb David C. Chan (Thu Mar 17 2005 - 08:54:17 CST)
- AMBER: compiler for amber8 on opteron Marc Petitmermet (Thu Mar 17 2005 - 09:56:37 CST)
- AMBER: Making topology files of big moleucles in antechamber Hwankyu Lee (Thu Mar 17 2005 - 10:09:06 CST)
- AMBER: add waters to a system + leap problem with solvateOct command Fabien Cailliez (Thu Mar 17 2005 - 12:30:24 CST)
- AMBER: Trajectory problems Steve Seibold (Thu Mar 17 2005 - 13:21:37 CST)
- AMBER: building helix bundle Yanze Zhang (Thu Mar 17 2005 - 15:30:54 CST)
- AMBER: Trajectory problems Steve Seibold (Thu Mar 17 2005 - 15:44:23 CST)
- AMBER: Separating solvent and solute energy in the microcanonical mode Mey Khalili (Thu Mar 17 2005 - 16:50:09 CST)
- AMBER: ptraj: determining solvent/ion densities Joseph W.Toporowski (Thu Mar 17 2005 - 19:40:38 CST)
- AMBER: re Updating Tutorials Vidana.Epa_at_csiro.au (Thu Mar 17 2005 - 21:17:50 CST)
- AMBER: Replica Exchange crashing Hayden Eastwood (Fri Mar 18 2005 - 06:39:48 CST)
- AMBER: layer Gustavo Pierdominici Sottile (Fri Mar 18 2005 - 08:42:53 CST)
- AMBER: lmanal input file problem Phineus Markwick (Fri Mar 18 2005 - 10:00:18 CST)
- AMBER: parameter meaning Wei Wang (Fri Mar 18 2005 - 12:33:15 CST)
- AMBER: Problems with Iodine David.Maxwell_at_di.mdacc.tmc.edu (Fri Mar 18 2005 - 15:03:38 CST)
- AMBER: question about periodicity of torsion parameter jz7_at_duke.edu (Fri Mar 18 2005 - 16:08:50 CST)
- AMBER: PMEMD with big systems Florian Barth (Fri Mar 18 2005 - 17:25:41 CST)
- AMBER: substrate exit from protein in Amber 8.0 TI vdw simulation Eric Hu (Fri Mar 18 2005 - 17:35:39 CST)
- AMBER: igb=10 some vdW terms disappear? Wells, David H (Mon Mar 21 2005 - 01:54:23 CST)
- AMBER: Making prepin file for individual residues of huge molecule. Hwankyu Lee (Mon Mar 21 2005 - 09:00:11 CST)
- AMBER: mm-pbsa with multiple-processors Eric Hu (Mon Mar 21 2005 - 16:21:16 CST)
- AMBER: Dual Xeon EM64T Intel Fortran Compile Problem Shekter, Lee (Mon Mar 21 2005 - 18:12:26 CST)
- RE: AMBER: Dual Xeon EM64T Intel Fortran Compile Problem Ross Walker (Mon Mar 21 2005 - 18:54:52 CST)
- RE: AMBER: Dual Xeon EM64T Intel Fortran Compile Problem Shekter, Lee (Mon Mar 21 2005 - 21:39:42 CST)
- RE: AMBER: Dual Xeon EM64T Intel Fortran Compile Problem Shekter, Lee (Wed Mar 23 2005 - 10:29:57 CST)
- AMBER: TMD force constant Phineus Markwick (Tue Mar 22 2005 - 07:14:53 CST)
- Re: AMBER: MD: Water network analysis + visualization sanjeev_at_mbu.iisc.ernet.in (Tue Mar 22 2005 - 07:58:24 CST)
- AMBER: nonbonded interaction Svetlana Kirillova (Tue Mar 22 2005 - 10:37:54 CST)
- Re: AMBER: nonbonded interaction David A. Case (Tue Mar 22 2005 - 23:38:08 CST)
- AMBER: align snapshots to a reference Wen Li (Tue Mar 29 2005 - 15:38:36 CST)
- Re: AMBER: align snapshots to a reference Carlos Simmerling (Tue Mar 29 2005 - 16:15:29 CST)
- Re: AMBER: align snapshots to a reference Wen Li (Wed Mar 30 2005 - 09:43:21 CST)
- Re: AMBER: align snapshots to a reference Carlos Simmerling (Wed Mar 30 2005 - 10:08:01 CST)
- Re: AMBER: align snapshots to a reference Wen Li (Wed Mar 30 2005 - 10:14:44 CST)
- Re: AMBER: align snapshots to a reference Thomas E. Cheatham, III (Wed Mar 30 2005 - 10:23:21 CST)
- Re: AMBER: align snapshots to a reference Wen Li (Wed Mar 30 2005 - 13:52:34 CST)
- Re: AMBER: align snapshots to a reference Carlos Simmerling (Wed Mar 30 2005 - 10:28:13 CST)
- AMBER: align snapshots to a reference Wen Li (Tue Mar 29 2005 - 15:38:36 CST)
- Re: AMBER: nonbonded interaction David A. Case (Tue Mar 22 2005 - 23:38:08 CST)
- AMBER: ANAL module/AMBER8 Vineet Pande (Tue Mar 22 2005 - 11:32:06 CST)
- AMBER: Amber8 Parallel installation troubles Joe Nolan (Tue Mar 22 2005 - 13:03:05 CST)
- AMBER: wierd behavior of addions jz7_at_duke.edu (Tue Mar 22 2005 - 13:22:54 CST)
- AMBER: Methionine with both C-ter and N-ter jz7_at_duke.edu (Tue Mar 22 2005 - 16:17:18 CST)
- AMBER: AMBER 8 installation problem -- undefined reference to `EXIT' luckyang_at_gmail.com (Tue Mar 22 2005 - 17:34:05 CST)
- Re: AMBER: AMBER 8 installation problem -- undefined reference to `EXIT' Wei Zhang (Tue Mar 22 2005 - 18:29:26 CST)
- Re: AMBER: AMBER 8 installation problem -- undefined reference to `EXIT' luckyang_at_gmail.com (Tue Mar 22 2005 - 18:46:26 CST)
- Re: AMBER: AMBER 8 installation problem -- undefined reference to `EXIT' Wei Zhang (Tue Mar 22 2005 - 19:34:26 CST)
- Re: AMBER: AMBER 8 installation problem -- undefined reference to `EXIT' luckyang_at_gmail.com (Wed Mar 23 2005 - 16:18:45 CST)
- Re: AMBER: AMBER 8 installation problem -- undefined reference to `EXIT' luckyang_at_gmail.com (Wed Mar 23 2005 - 17:01:49 CST)
- Re: AMBER: AMBER 8 installation problem -- undefined reference to `EXIT' Wei Zhang (Wed Mar 23 2005 - 18:49:14 CST)
- Re: AMBER: AMBER 8 installation problem -- undefined reference to `EXIT' luckyang_at_gmail.com (Tue Mar 22 2005 - 18:46:26 CST)
- Re: AMBER: AMBER 8 installation problem -- undefined reference to `EXIT' Wei Zhang (Tue Mar 22 2005 - 18:29:26 CST)
- AMBER: "ERROR TERMINATION DUE TO SHAKE OR TORCON" in Gibbs tanc_at_uci.edu (Tue Mar 22 2005 - 23:11:41 CST)
- Re: AMBER: nonbonded interactions Svetlana Kirillova (Wed Mar 23 2005 - 03:23:47 CST)
- AMBER: warning in PBSA Fabien Cailliez (Wed Mar 23 2005 - 07:39:00 CST)
- AMBER: Could not open file (trajin) with mode (r) Maciej (Wed Mar 23 2005 - 07:52:20 CST)
- AMBER: antechamber availability dmitri.mikhailov_at_novartis.com (Wed Mar 23 2005 - 14:40:47 CST)
- AMBER: A few question about RDF input preparation Maciej (Thu Mar 24 2005 - 05:13:10 CST)
- AMBER: Make test error Amber (Thu Mar 24 2005 - 15:10:53 CST)
- AMBER: question about placing a substrate in a protein pocket Kara Di Giorgio (Thu Mar 24 2005 - 22:33:26 CST)
- AMBER: Re: ask for your help: parallel on mm_pbsa FyD (Sat Mar 26 2005 - 11:09:23 CST)
- AMBER: PTRAJ:"hbond" doubts Vineet Pande (Sun Mar 27 2005 - 07:55:24 CST)
- AMBER: missing residue xueping (Mon Mar 28 2005 - 01:34:17 CST)
- AMBER: ptraj analysis Tatyana B Mamonova (Mon Mar 28 2005 - 11:24:55 CST)
- AMBER: Parameter files for general lipids Nitin Bhardwaj (Mon Mar 28 2005 - 18:57:46 CST)
- AMBER: REM mdinfo file Sergio E. Wong (Mon Mar 28 2005 - 19:51:45 CST)
- AMBER: vlimit exceeded in thermalization Holly Freedman (Mon Mar 28 2005 - 22:16:12 CST)
- AMBER: Are the constant pH simulations with explicit water possible? Kateryna Miroshnychenko (Tue Mar 29 2005 - 07:54:14 CST)
- AMBER: protonated aspartic acid Adrian E. Roitberg (Tue Mar 29 2005 - 14:14:35 CST)
- AMBER: tleap,xleap bond order for triple bonds Stern, Julie (Tue Mar 29 2005 - 16:49:38 CST)
- AMBER: Minimization failure S.Sundar Raman (Tue Mar 29 2005 - 22:47:22 CST)
- AMBER: how to cap regions S.Sundar Raman (Tue Mar 29 2005 - 23:00:12 CST)
- AMBER: Amber Performance in Parallel on Itanium Robert J. Woods (Wed Mar 30 2005 - 09:32:10 CST)
- AMBER: PTRAJ:"hbond" analysis Vineet Pande (Wed Mar 30 2005 - 11:15:30 CST)
- AMBER: OH- dynamics Eric Hu (Wed Mar 30 2005 - 11:55:19 CST)
- AMBER: igb10 vlimit exceeded Wells, David H (Thu Mar 31 2005 - 03:08:55 CST)
- AMBER: All the tests passed except prmtop and prepin... mmv_at_whu.edu.cn (Thu Mar 31 2005 - 03:59:26 CST)
- AMBER: AMBER under MOSIX? Atro Tossavainen (Thu Mar 31 2005 - 05:47:47 CST)
- AMBER: Compiling on dual-opteron with pathscale 2.1 on RHEL 4 AS Marc Petitmermet (Thu Mar 31 2005 - 09:32:31 CST)
- AMBER: What does this mean .. ? Pavan Ghatty (Thu Mar 31 2005 - 13:14:53 CST)
- AMBER: leap bond error Stern, Julie (Thu Mar 31 2005 - 19:11:29 CST)
- AMBER: Target MD and nmode test hang Mingfeng Yang (Thu Mar 31 2005 - 20:08:13 CST)
- AMBER: GB dynamics mathew k varghese (Thu Mar 31 2005 - 22:01:30 CST)
- Re: AMBER: GB dynamics David A. Case (Fri Apr 01 2005 - 10:16:46 CST)
- AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 11:38:02 CST)
- Re: AMBER: trajectory alignment using ptraj Thomas E. Cheatham, III (Fri Apr 01 2005 - 11:47:30 CST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 12:42:36 CST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 14:12:34 CST)
- Re: AMBER: trajectory alignment using ptraj Thomas E. Cheatham, III (Fri Apr 01 2005 - 14:39:07 CST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 15:23:14 CST)
- Re: AMBER: trajectory alignment using ptraj Thomas E. Cheatham, III (Fri Apr 01 2005 - 15:38:50 CST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 20:42:43 CST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 15:37:57 CST)
- AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 11:38:02 CST)
- Re: AMBER: GB dynamics David A. Case (Fri Apr 01 2005 - 10:16:46 CST)
- AMBER: solvateoct mymolecule CHCL3BOX 10 PROBLEM!!! chaiann ng (Thu Mar 31 2005 - 22:30:40 CST)
- AMBER: How to fix the torsion angles during energy minimization Ananda Rama Krishnan Selvaraj (Fri Apr 01 2005 - 00:42:27 CST)
- AMBER: scaleCharges with polarisable force fields Phineus Markwick (Fri Apr 01 2005 - 06:57:43 CST)
- AMBER: Problems with protonate on Linux Atro Tossavainen (Fri Apr 01 2005 - 07:09:32 CST)
- AMBER: reference of Targeted MD xhu1_at_memphis.edu (Fri Apr 01 2005 - 15:52:59 CST)
- Re: AMBER: GB dynamics Bill Ross (Fri Apr 01 2005 - 15:55:07 CST)
- AMBER: oxo-heme Peter Gannett (Fri Apr 01 2005 - 16:32:47 CST)
- AMBER: problem with input files when using ff02EP + pol3 Phineus Markwick (Sun Apr 03 2005 - 07:35:28 CDT)
- AMBER: helical parameters obtaining Kateryna Miroshnychenko (Sat Apr 02 2005 - 05:08:17 CST)
- AMBER: surface area John (Mon Apr 04 2005 - 05:35:58 CDT)
- AMBER: Sander minimization & dynamic question chaiann ng (Mon Apr 04 2005 - 05:45:48 CDT)
- AMBER: ff02EP + pol3 (2) Phineus Markwick (Mon Apr 04 2005 - 07:06:36 CDT)
- AMBER: emilia wu (Mon Apr 04 2005 - 09:11:48 CDT)
- AMBER: single-stranded poly(rC) simulation Kateryna Miroshnychenko (Mon Apr 04 2005 - 08:49:39 CDT)
- AMBER: force constant Unit used in TMD xhu1_at_memphis.edu (Mon Apr 04 2005 - 10:05:30 CDT)
- Re: AMBER: force constant Unit used in TMD Carlos Simmerling (Mon Apr 04 2005 - 11:06:45 CDT)
- Re: AMBER: force constant Unit used in TMD xhu1_at_memphis.edu (Mon Apr 04 2005 - 11:33:01 CDT)
- Re: AMBER: force constant Unit used in TMD xhu1_at_memphis.edu (Mon Apr 04 2005 - 12:28:36 CDT)
- Re: AMBER: force constant Unit used in TMD xhu1_at_memphis.edu (Mon Apr 04 2005 - 12:59:02 CDT)
- AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters Wu Yingliang (Tue Apr 05 2005 - 01:18:11 CDT)
- Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters Wei Zhang (Tue Apr 05 2005 - 02:49:38 CDT)
- Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters David A. Case (Tue Apr 05 2005 - 10:31:15 CDT)
- Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters Bill Ross (Tue Apr 05 2005 - 11:26:34 CDT)
- AMBER: AMBER 8.0 problems with impose (tleap) on linux Guillermo Mulliert Carlín (Tue Apr 05 2005 - 01:35:17 CDT)
- AMBER: how to make a nonsymmetric box around the solute Lina Nilsson (Tue Apr 05 2005 - 02:56:44 CDT)
- AMBER: doble C and N terminal Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) (Tue Apr 05 2005 - 04:45:58 CDT)
- AMBER: GB with Langevin dynamics problem Peter Varnai (Tue Apr 05 2005 - 11:04:15 CDT)
- AMBER: Re:Re:single-stranded poly(rC) simulation Kateryna Miroshnychenko (Tue Apr 05 2005 - 12:37:54 CDT)
- AMBER: Protein with structural ions Kara Wald (Tue Apr 05 2005 - 16:29:46 CDT)
- Re: AMBER: Protein with structural ions Oliver Hucke (Tue Apr 05 2005 - 16:42:29 CDT)
- RE: AMBER: Protein with structural ions Kara Di Giorgio (Tue Apr 12 2005 - 10:51:32 CDT)
- Re: AMBER: Protein with structural ions Carlos Simmerling (Tue Apr 12 2005 - 11:09:48 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Tue Apr 12 2005 - 11:59:40 CDT)
- Re: Re: AMBER: Protein with structural ions Yong Xu (Tue Apr 05 2005 - 23:34:55 CDT)
- Re: AMBER: Protein with structural ions Tim Meyer (Thu Apr 07 2005 - 09:05:15 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Fri Apr 08 2005 - 00:29:26 CDT)
- Re: AMBER: Protein with structural ions David A. Case (Fri Apr 08 2005 - 10:41:22 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Fri Apr 08 2005 - 11:30:26 CDT)
- Re: AMBER: Protein with structural ions David A. Case (Fri Apr 08 2005 - 12:29:44 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Fri Apr 08 2005 - 13:55:41 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Sun Apr 10 2005 - 22:05:08 CDT)
- Re: AMBER: Protein with structural ions David A. Case (Sun Apr 10 2005 - 23:04:52 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Sun Apr 10 2005 - 23:47:29 CDT)
- Re: AMBER: Protein with structural ions David A. Case (Mon Apr 11 2005 - 09:50:28 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Mon Apr 11 2005 - 10:40:45 CDT)
- Re: Re: AMBER: Protein with structural ions Y. Xu (Fri Apr 08 2005 - 01:39:45 CDT)
- Re: AMBER: Protein with structural ions Carlos Simmerling (Tue Apr 12 2005 - 11:09:48 CDT)
- AMBER: FW: Amber installation Eric Mullins (Wed Apr 06 2005 - 10:36:20 CDT)
- AMBER: a bimolecular reaction Eric Hu (Wed Apr 06 2005 - 12:14:23 CDT)
- Re: AMBER: a bimolecular reaction David A. Case (Tue Apr 12 2005 - 11:59:07 CDT)
- Re: AMBER: a bimolecular reaction duan_list_at_albert.genomecenter.ucdavis.edu (Tue Apr 12 2005 - 13:00:14 CDT)
- Re: AMBER: a bimolecular reaction Eric Hu (Tue Apr 12 2005 - 18:50:58 CDT)
- Re: AMBER: a bimolecular reaction Yong Duan (Tue Apr 12 2005 - 19:22:51 CDT)
- Re: AMBER: a bimolecular reaction Eric Hu (Wed Apr 13 2005 - 13:08:03 CDT)
- RE: AMBER: a bimolecular reaction Yong Duan (Wed Apr 13 2005 - 14:51:08 CDT)
- Re: AMBER: a bimolecular reaction Yong Duan (Fri Jul 22 2005 - 12:44:23 CDT)
- Re: AMBER: a bimolecular reaction duan_list_at_albert.genomecenter.ucdavis.edu (Tue Apr 12 2005 - 13:00:14 CDT)
- Re: AMBER: a bimolecular reaction David A. Case (Tue Apr 12 2005 - 11:59:07 CDT)
- AMBER: About Gaussian Key Words Katagiri Daisuke (Wed Apr 06 2005 - 22:10:12 CDT)
- AMBER: value of SALTCON mathew k varghese (Wed Apr 06 2005 - 23:29:01 CDT)
- AMBER: combine mdcrd using ptraj xueping (Wed Apr 06 2005 - 23:41:48 CDT)
- AMBER: RADIOPT=1 Fabien Cailliez (Thu Apr 07 2005 - 08:19:09 CDT)
- AMBER: RE: system comparison for amber Ross Walker (Thu Apr 07 2005 - 11:41:06 CDT)
- AMBER: leap single precision Guanglei Cui (Thu Apr 07 2005 - 13:04:20 CDT)
- Re: AMBER: About Gaussian Key Words (fwd) duan_list_at_albert.genomecenter.ucdavis.edu (Thu Apr 07 2005 - 18:09:25 CDT)
- AMBER: makeDIST_RST ERROR Y. Xu (Thu Apr 07 2005 - 21:14:19 CDT)
- AMBER: problems with "protonate" Kenley Barrett (Thu Apr 07 2005 - 21:27:07 CDT)
- AMBER: how to get the parameters for modified amino acid residue? ying xiong (Thu Apr 07 2005 - 22:31:14 CDT)
- AMBER: linit in mm-pbsa Fabien Cailliez (Fri Apr 08 2005 - 04:08:52 CDT)
- AMBER: Disulfide bond michael chen (Fri Apr 08 2005 - 09:36:41 CDT)
- AMBER: GB with Langevin dynamics problem 2 Peter Varnai (Fri Apr 08 2005 - 11:29:08 CDT)
- AMBER: Announcment: Nucleic Acid Builder (NAB) version 5 is released David A. Case (Fri Apr 08 2005 - 11:52:54 CDT)
- AMBER: question about TGMD: vlimit exceeded for step xhu1_at_memphis.edu (Fri Apr 08 2005 - 15:31:10 CDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step Viktor Hornak (Fri Apr 08 2005 - 15:47:40 CDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step xhu1_at_memphis.edu (Fri Apr 08 2005 - 16:55:05 CDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step xhu1_at_memphis.edu (Fri Apr 08 2005 - 18:04:17 CDT)
- AMBER: average structure-ptraj xueping (Sat Apr 09 2005 - 03:23:23 CDT)
- AMBER: A question on connecting residues in xleap Hwankyu Lee (Sun Apr 10 2005 - 11:54:55 CDT)
- AMBER: Warnings as a file Pavan Ghatty (Sun Apr 10 2005 - 23:37:21 CDT)
- AMBER: Two question about dielectric constant ěÇ Îä (Mon Apr 11 2005 - 03:02:10 CDT)
- AMBER: rst file problems mathew k varghese (Mon Apr 11 2005 - 05:03:41 CDT)
- Re: AMBER: rst file problems Carlos Simmerling (Mon Apr 11 2005 - 08:22:41 CDT)
- Re: AMBER: rst file problems mathew k varghese (Mon Apr 11 2005 - 22:13:21 CDT)
- Re: AMBER: rst file problems Furse, Kristina Elisabet (Tue Apr 12 2005 - 15:39:35 CDT)
- AMBER:FAD can't be minimized. zhli_2000_at_126.com (Mon Apr 11 2005 - 07:48:15 CDT)
- AMBER: breaking symmetry in minimization Stern, Julie (Mon Apr 11 2005 - 15:58:53 CDT)
- Re: AMBER: breaking symmetry in minimization Bill Ross (Mon Apr 11 2005 - 17:25:25 CDT)
- AMBER: Fail to load the trajectory file. Jinzhi Lei (Mon Apr 11 2005 - 19:36:34 CDT)
- Re: AMBER: Fail to load the trajectory file. Bill Ross (Mon Apr 11 2005 - 19:41:52 CDT)
- AMBER: peptide side chain modification with LEAP Hannes Barsch (Tue Apr 12 2005 - 09:19:53 CDT)
- AMBER: implementing AMBER in NAMD Lina Nilsson (Thu Apr 28 2005 - 09:23:16 CDT)
- AMBER: Does anybody know the experimental solvation free energies of Efavirenz and some other DPC drugs Ye MEI (Tue Apr 12 2005 - 10:19:37 CDT)
- Re: AMBER: peptide side chain modification with LEAP Bill Ross (Tue Apr 12 2005 - 11:22:40 CDT)
- AMBER: Silicon related parameters luckyang_at_gmail.com (Tue Apr 12 2005 - 11:38:35 CDT)
- AMBER: ibelly not working Stern, Julie (Tue Apr 12 2005 - 11:52:56 CDT)
- AMBER: vdw or center box dimensions, periodicity, and the jagged edge Stern, Julie (Tue Apr 12 2005 - 12:30:38 CDT)
- AMBER: Protein With Structural Ions Kara Di Giorgio (Tue Apr 12 2005 - 12:47:52 CDT)
- AMBER: No. of Snapshots in MM/GB/SA Sagar D Khare (Tue Apr 12 2005 - 12:48:44 CDT)
- Re: AMBER: ibelly not working Bill Ross (Tue Apr 12 2005 - 13:11:28 CDT)
- AMBER: ptraj, hbond problem Joseph W.Toporowski (Tue Apr 12 2005 - 19:07:35 CDT)
- AMBER: MM-PBSA in protein-Zn-ligand system Yong Xu (Tue Apr 12 2005 - 20:37:55 CDT)
- AMBER: freee energy calculation without minimised structure S.Sundar Raman (Wed Apr 13 2005 - 02:00:08 CDT)
- AMBER: Watson-Crick restraints YoungJin Cho (Wed Apr 13 2005 - 09:43:22 CDT)
- AMBER: what is wrong with my amber job or installation? Amber (Wed Apr 13 2005 - 13:57:56 CDT)
- AMBER: Formatting a restraint file Kara Wald (Wed Apr 13 2005 - 15:57:24 CDT)
- Re: AMBER: Formatting a restraint file Carlos Simmerling (Wed Apr 13 2005 - 16:18:54 CDT)
- Re: AMBER: Formatting a restraint file Furse, Kristina Elisabet (Thu Apr 14 2005 - 00:06:49 CDT)
- Re: AMBER: Formatting a restraint file Furse, Kristina Elisabet (Thu Apr 14 2005 - 15:02:20 CDT)
- AMBER: xleap, lib file question opitz_at_che.udel.edu (Wed Apr 13 2005 - 16:36:51 CDT)
- AMBER: solvate water box bybaker_at_itsa.ucsf.edu (Thu Apr 14 2005 - 01:42:21 CDT)
- AMBER: Antechamber -reorders atom sequence Austin B. Yongye (Thu Apr 14 2005 - 07:05:09 CDT)
- AMBER: Warning: Error opening "New" file from subroutine OPNMRG in pmemd Fabien Cailliez (Thu Apr 14 2005 - 08:05:32 CDT)
- AMBER: periodic boundaries and repeating structure Stern, Julie (Thu Apr 14 2005 - 12:55:09 CDT)
- AMBER: antechamber for cyano group nlxc (Thu Apr 14 2005 - 13:03:35 CDT)
- Re: AMBER: periodic boundaries and repeating structure Bill Ross (Thu Apr 14 2005 - 13:13:48 CDT)
- AMBER: Sander/Mpich2 error with mpd_singinit Joe Nolan (Thu Apr 14 2005 - 15:00:09 CDT)
- AMBER: small target pressure in constant pressure dynamics Eric Hu (Thu Apr 14 2005 - 16:37:49 CDT)
- AMBER: big fluctuation in MM-PBSA/GA Eric Hu (Thu Apr 14 2005 - 17:54:05 CDT)
- AMBER: parameters in gaff.dat Lihua Wang (Fri Apr 15 2005 - 00:21:29 CDT)
- AMBER: how to make the prepin file for dimer and clusters of organic molecule in Amber7 Ananda Rama Krishnan Selvaraj (Fri Apr 15 2005 - 03:11:27 CDT)
- AMBER: carnal problem Ed Pate (Fri Apr 15 2005 - 11:15:54 CDT)
- AMBER: SollvateBox with ethanol Huaer XC (Fri Apr 15 2005 - 11:21:01 CDT)
- AMBER: gaff atom types Claudio Morgado (Fri Apr 15 2005 - 12:11:18 CDT)
- Re: AMBER: carnal problem Bill Ross (Fri Apr 15 2005 - 12:32:02 CDT)
- AMBER: RESP charges with Gaussian03 and Amber Delon Wilson (Fri Apr 15 2005 - 15:57:19 CDT)
- Re: AMBER: RESP charges with Gaussian03 and Amber FyD (Fri Apr 15 2005 - 17:16:05 CDT)
- AMBER: RESP charges with Gaussian03 and Amber Delon Wilson (Mon Apr 18 2005 - 08:19:16 CDT)
- AMBER: the restart of replica exchange method (REM) simulations in AMBER8 Scott E. Boesch (Fri Apr 15 2005 - 16:24:24 CDT)
- AMBER: about equilibration dynamics S.Sundar Raman (Mon Apr 18 2005 - 02:18:10 CDT)
- AMBER: ATTN REVISION ÂŔşŁćĂ (Mon Apr 18 2005 - 03:19:46 CDT)
- AMBER: dielectric constant Nina Fischer (Mon Apr 18 2005 - 03:22:34 CDT)
- AMBER:Bond lengths aren't reasonable after minimisation. zhli_2000_at_126.com (Mon Apr 18 2005 - 05:39:22 CDT)
- AMBER: Rep Exch. suggestion Brent Krueger (Mon Apr 18 2005 - 06:56:33 CDT)
- AMBER: langevin, GB and simulated annealing? pascal.baillod_at_epfl.ch (Mon Apr 18 2005 - 10:14:08 CDT)
- Re: AMBER: langevin, GB and simulated annealing? Adrian E. Roitberg (Mon Apr 18 2005 - 10:21:04 CDT)
- Re: AMBER: langevin, GB and simulated annealing? Carlos Simmerling (Mon Apr 18 2005 - 10:36:19 CDT)
- AMBER: Dual Xeon EM64T Intel Fortran Compiler Shekter, Lee (Mon Apr 18 2005 - 13:17:58 CDT)
- AMBER: local dielectric constant Xavier Deupi (Mon Apr 18 2005 - 20:17:40 CDT)
- AMBER: Re: Re: AMBER: ATTN REVISION ÂŔşŁćĂ (Mon Apr 18 2005 - 20:38:02 CDT)
- AMBER: RESP charges - multiple conformations Austin B. Yongye (Mon Apr 18 2005 - 21:54:20 CDT)
- AMBER: New parametrs Maciej (Tue Apr 19 2005 - 00:38:51 CDT)
- AMBER: GAFF: H type on carbon bearing a cyano group Claudio Morgado (Tue Apr 19 2005 - 03:34:12 CDT)
- AMBER: Amber8 installation on IBM (power4) with SUSE 9.1 Linux (IBM XLF compiler) Soo Joo (Tue Apr 19 2005 - 04:36:26 CDT)
- AMBER: solvent accessible surface area John (Tue Apr 19 2005 - 05:45:40 CDT)
- AMBER: Gibbs compilation problem Maciej (Tue Apr 19 2005 - 06:36:52 CDT)
- AMBER: a problem with mm_pbsa Ye MEI (Tue Apr 19 2005 - 09:23:01 CDT)
- AMBER: Amber compilation problem David A. Case (Tue Apr 19 2005 - 09:59:27 CDT)
- AMBER: Non-Bonded Cutoff vs PME Vineet Pande (Tue Apr 19 2005 - 11:13:26 CDT)
- AMBER: Yong Xu (Tue Apr 19 2005 - 21:57:44 CDT)
- AMBER: tleap and water thenmalar (Wed Apr 20 2005 - 03:13:58 CDT)
- AMBER: GB and mm_pbsa.pl Nelson Fonseca (Wed Apr 20 2005 - 06:48:48 CDT)
- AMBER: interaction between residues Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) (Wed Apr 20 2005 - 09:27:31 CDT)
- AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation. zhli_2000 (Wed Apr 20 2005 - 08:52:18 CDT)
- AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation. Ross Walker (Wed Apr 20 2005 - 12:04:03 CDT)
- AMBER: ibelly not working Stern, Julie (Wed Apr 20 2005 - 14:40:28 CDT)
- AMBER: intramolecular nonbonded interactions in AMBER force field John Silvio Vieceli (Wed Apr 20 2005 - 17:06:48 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Carlos Simmerling (Wed Apr 20 2005 - 17:28:08 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Vineet Pande (Thu Apr 21 2005 - 03:33:19 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Carlos Simmerling (Thu Apr 21 2005 - 07:50:46 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Vineet Pande (Thu Apr 21 2005 - 08:26:30 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Thomas E. Cheatham, III (Thu Apr 21 2005 - 09:50:24 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field David A. Case (Thu Apr 21 2005 - 10:42:10 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Guanglei Cui (Fri Apr 22 2005 - 08:52:53 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Vineet Pande (Thu Apr 21 2005 - 03:33:19 CDT)
- RE: AMBER: intramolecular nonbonded interactions in AMBER force field Ross Walker (Wed Apr 20 2005 - 17:33:41 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Carlos Simmerling (Wed Apr 20 2005 - 17:28:08 CDT)
- AMBER: about run time in GB and PB Yong Xu (Thu Apr 21 2005 - 03:06:27 CDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 03:26:26 CDT)
- RE: AMBER: about run time in GB and PB Yong Duan (Thu Apr 21 2005 - 03:57:32 CDT)
- Re: RE: AMBER: about run time in GB and PB Yong Xu (Thu Apr 21 2005 - 08:17:19 CDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 09:10:20 CDT)
- Re: AMBER: about run time in GB and PB Yong Xu (Fri Apr 22 2005 - 03:19:05 CDT)
- Re: Re: AMBER: about run time in GB and PB Yong Xu (Thu Apr 21 2005 - 03:55:41 CDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 05:15:57 CDT)
- RE: AMBER: about run time in GB and PB Yong Duan (Thu Apr 21 2005 - 03:57:32 CDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 03:26:26 CDT)
- AMBER: On the role of neutralizing ions in GB-MD and GBSA Wu Yingliang (Thu Apr 21 2005 - 05:26:05 CDT)
- AMBER: On the role of neutralizing ions in GB-MD and GBSA Wu Yingliang (Thu Apr 21 2005 - 05:16:29 CDT)
- AMBER: Nose-Hoover thermostat Sam Moors (Thu Apr 21 2005 - 07:40:44 CDT)
- AMBER: re: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 09:29:33 CDT)
- AMBER: Moil-view and Quicktime movie Steve Seibold (Thu Apr 21 2005 - 09:55:01 CDT)
- AMBER: Sander bomb - atom out of bounds Joe Nolan (Thu Apr 21 2005 - 12:46:01 CDT)
- AMBER: problem with belly calculation restart Ed Pate (Thu Apr 21 2005 - 19:28:59 CDT)
- AMBER: mean structure calculation mmv (Fri Apr 22 2005 - 04:17:20 CDT)
- AMBER: PB Bomb in circle(): Stored surface points over limit Nelson Fonseca (Fri Apr 22 2005 - 07:56:57 CDT)
- AMBER: writing MASKs Sagar D Khare (Fri Apr 22 2005 - 09:58:24 CDT)
- AMBER: strange VDWAALS and EEL energies calculated by pbsa Fabien Cailliez (Fri Apr 22 2005 - 10:56:41 CDT)
- Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa Carlos Simmerling (Fri Apr 22 2005 - 11:05:42 CDT)
- Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa David A. Case (Fri Apr 22 2005 - 11:12:15 CDT)
- Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa Ray Luo (Thu Apr 21 2005 - 07:18:17 CDT)
- AMBER: Induced dipole in AMBER8 Cenk Andac (Fri Apr 22 2005 - 11:57:56 CDT)
- AMBER: Amber Installation pmullins (Fri Apr 22 2005 - 13:28:34 CDT)
- AMBER: Calculate vdw parameters for alkaline earth metal ions Kenley Barrett (Fri Apr 22 2005 - 17:19:23 CDT)
- Re: AMBER: Calculate vdw parameters for alkaline earth metal ions Bill Ross (Fri Apr 22 2005 - 17:48:15 CDT)
- AMBER: Problem when converting AMBER trajectories to CHARMM format Chen Hu (Sat Apr 23 2005 - 17:20:56 CDT)
- AMBER: serial and parallel Aknb (Sun Apr 24 2005 - 06:35:37 CDT)
- AMBER: coordinates translation Ye MEI (Sun Apr 24 2005 - 11:26:39 CDT)
- AMBER: AMBER Test Error tpatko (Sun Apr 24 2005 - 19:31:42 CDT)
- AMBER: How to deal with the Non-standard residue lv haiting (Mon Apr 25 2005 - 03:18:08 CDT)
- AMBER: the restarting error zhli_2000_at_126.com (Mon Apr 25 2005 - 09:08:02 CDT)
- AMBER: Free energy pertubation (thermodynamic intergration) mrbroad_at_ilstu.edu (Mon Apr 25 2005 - 11:20:35 CDT)
- AMBER: radius parameter for F atom Ye MEI (Mon Apr 25 2005 - 12:05:06 CDT)
- AMBER: mm_pbsa problem Husni Fattayer (Mon Apr 25 2005 - 15:59:22 CDT)
- AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Mon Apr 25 2005 - 20:47:19 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Thomas Steinbrecher (Tue Apr 26 2005 - 03:37:01 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Wed Apr 27 2005 - 23:34:32 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Petr Kulhanek (Thu Apr 28 2005 - 02:02:47 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Thu Apr 28 2005 - 18:34:48 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth David Case (Thu Apr 28 2005 - 08:03:00 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Thu Apr 28 2005 - 19:00:11 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Wed Apr 27 2005 - 23:34:32 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Thomas Steinbrecher (Tue Apr 26 2005 - 03:37:01 CDT)
- AMBER: Free energy Maciej (Tue Apr 26 2005 - 02:01:16 CDT)
- AMBER: Re:Gibbs compilation problem Maciej (Tue Apr 26 2005 - 02:05:31 CDT)
- AMBER: langevin, GB and simulated annealing - 3 pascal.baillod_at_epfl.ch (Tue Apr 26 2005 - 05:37:16 CDT)
- AMBER: AMBER Test Anthony Cruz (Tue Apr 26 2005 - 05:36:27 CDT)
- AMBER: doesn't work in pmemd, and no output in parallel simulations Hwankyu Lee (Tue Apr 26 2005 - 15:35:26 CDT)
- AMBER: capping amit_at_mbu.iisc.ernet.in (Wed Apr 27 2005 - 02:30:37 CDT)
- AMBER: emilia wu (Wed Apr 27 2005 - 21:35:59 CDT)
- AMBER: mixture solvent model Huaer XC (Wed Apr 27 2005 - 23:13:11 CDT)
- AMBER: distance restraints mathew k varghese (Thu Apr 28 2005 - 02:00:16 CDT)
- AMBER: Problem with "Thermodynamic integration calculations" tutorial ,unsuspected error Maciej (Thu Apr 28 2005 - 02:41:21 CDT)
- AMBER: false bond created upon coordinate retrieval Stern, Julie (Thu Apr 28 2005 - 16:29:38 CDT)
- Re: AMBER: false bond created upon coordinate retrieval Bill Ross (Thu Apr 28 2005 - 17:00:38 CDT)
- AMBER: segmentation problem aanzellotti_at_mail2.vcu.edu (Thu Apr 28 2005 - 18:46:36 CDT)
- AMBER: Re: R.E.D. question FyD (Fri Apr 29 2005 - 15:21:34 CDT)
- AMBER: Odd Antechamber Behavior Kara Di Giorgio (Fri Apr 29 2005 - 23:48:01 CDT)
- AMBER: ipol=1 & use_pme= ?? Cenk Andac (Sat Apr 30 2005 - 08:26:57 CDT)
- AMBER: Identifying water molecules with ptraj Joseph Fernandez (Sun May 01 2005 - 16:00:59 CDT)
- AMBER: fast 1/r methods Brent Krueger (Mon May 02 2005 - 06:51:56 CDT)
- AMBER: How to fix the atom in NPT case? george Chen (Mon May 02 2005 - 13:19:54 CDT)
- AMBER: sander run YoungJin Cho (Mon May 02 2005 - 15:45:01 CDT)
- AMBER: GB with dipoles ! Pradipta Bandyopadhyay (Tue May 03 2005 - 06:54:44 CDT)
- Fwd: Re: AMBER: AMBER Test Anthony Cruz (Tue May 03 2005 - 07:25:46 CDT)
- AMBER: Can I add iodide anione? Myunggi Yi (Tue May 03 2005 - 12:36:07 CDT)
- AMBER: rborn(i) in egb.f Harianto Tjong (Tue May 03 2005 - 14:04:39 CDT)
- AMBER: NOE constraints Hui-Hsu Tsai (Tue May 03 2005 - 14:18:27 CDT)
- AMBER: Relative stability with MMPBSA Angelo Pugliese (Wed May 04 2005 - 11:09:27 CDT)
- AMBER: Bromelain PDF xleap load error Thomas Patko (Wed May 04 2005 - 12:13:35 CDT)
- Re: AMBER: Bromelain PDF xleap load error (Proton Problems?) Thomas Patko (Thu May 05 2005 - 17:02:40 CDT)
- AMBER: mm/pbsa error Eric Hu (Wed May 04 2005 - 13:06:34 CDT)
- AMBER: Meaning of induced dipole moments for atom pairs? Cenk Andac (Wed May 04 2005 - 15:52:06 CDT)
- AMBER: How can I read parm99.dat file? Myunggi Yi (Wed May 04 2005 - 18:08:49 CDT)
- Re: AMBER: How can I read parm99.dat file? Bill Ross (Wed May 04 2005 - 19:12:08 CDT)
- AMBER: ibelly in nmode Dawei Zhang (Thu May 05 2005 - 14:23:13 CDT)
- AMBER: problem with gb md emilia wu (Thu May 05 2005 - 21:05:00 CDT)
- AMBER: No vdW parameters for HO.. Vineet Pande (Fri May 06 2005 - 05:20:02 CDT)
- AMBER: a nomenclature question Kenley Barrett (Fri May 06 2005 - 11:11:24 CDT)
- AMBER: Dr. Cornell's calculation of Sulfur vdw epsilon value in parm94.dat? Chris Moth (Fri May 06 2005 - 14:32:23 CDT)
- 75% Off for All New Softs Now! haberman Rogelio Adams (Fri May 06 2005 - 22:19:57 CDT)
- AMBER: langevin, GB and simulated annealing - 5 pascal.baillod_at_epfl.ch (Mon May 09 2005 - 11:25:12 CDT)
- Re: AMBER: langevin, GB and simulated annealing - 5 Carlos Simmerling (Mon May 09 2005 - 14:58:57 CDT)
- Re: AMBER: langevin, GB and simulated annealing - 5 David A. Case (Mon May 09 2005 - 18:18:04 CDT)
- AMBER: radial distribution function Myunggi Yi (Mon May 09 2005 - 13:36:43 CDT)
- The new ganaration of repliccas is here capella Linda Hooks (Mon May 09 2005 - 20:53:45 CDT)
- AMBER: parameter for sulfur in thio-octyl-glucopyranoside Vijay Manickam Achari (Mon May 09 2005 - 22:23:07 CDT)
- AMBER: AMBER8 Build on Linux x64 running Opterons Thomas Patko (Wed May 11 2005 - 02:10:14 CDT)
- Re: AMBER: AMBER8 Build on Linux x64 running Opterons Mark Rance (Wed May 11 2005 - 10:02:05 CDT)
- Re: AMBER: AMBER8 Build on Linux x64 running Opterons Bill Ross (Thu May 12 2005 - 15:08:34 CDT)
- AMBER: Trouble with example tutorial Maciej (Wed May 11 2005 - 06:08:02 CDT)
- You wont believe these pr1ces on name-brannd soft's! kerchief Ismael Childers (Wed May 11 2005 - 10:06:11 CDT)
- AMBER: Parameter for alpha-lactose Sagarika Dev (Wed May 11 2005 - 09:48:21 CDT)
- AMBER: Asking how to creat alanine "dipeptide" in amber8 Li Su (Wed May 11 2005 - 10:37:07 CDT)
- Re: AMBER: Asking how to creat alanine "dipeptide" in amber8 Thomas E. Cheatham, III (Wed May 11 2005 - 10:38:54 CDT)
- Re: AMBER: Asking how to creat alanine "dipeptide" in amber8 FyD (Wed May 11 2005 - 11:06:27 CDT)
- RE: AMBER: Asking how to creat alanine "dipeptide" in amber8 Ross Walker (Wed May 11 2005 - 12:13:30 CDT)
- Fwd: Re: AMBER: AMBER Test Anthony Cruz (Wed May 11 2005 - 10:49:38 CDT)
- AMBER: SANDER BOMB: volume of ucell too big Stern, Julie (Wed May 11 2005 - 11:07:38 CDT)
- AMBER: maximum number of processors MURAT CETINKAYA (Wed May 11 2005 - 22:53:44 CDT)
- We can send you disccounted errection mads party Freeman William (Thu May 12 2005 - 00:23:35 CDT)
- AMBER: RESP charge fitting for N-methylguanine cation Grzegorz Jezierski (Thu May 12 2005 - 11:50:17 CDT)
- AMBER: Tutorial #1 ptraj/sander problem Daniela Kohen (Thu May 12 2005 - 17:03:07 CDT)
- AMBER: the restraint MD fail with amber8,but success with amber7 Shulin Zhuang (Thu May 12 2005 - 20:44:04 CDT)
- AMBER: amber8 test error Cordova, Luis E. (Thu May 12 2005 - 22:26:00 CDT)
- AMBER: creating residues - charge assign problems Hayden Eastwood (Fri May 13 2005 - 06:06:06 CDT)
- AMBER: platinum atom in Xleap Chen Chengwen (Fri May 13 2005 - 21:11:12 CDT)
- AMBER: How to create a parallel job for amber 8? Ň׺ç (Sat May 14 2005 - 06:20:15 CDT)
- A new rollax repliccas is in the mark. attitudinal Russel Granger (Sat May 14 2005 - 11:02:36 CDT)
- AMBER: Which source file determine the initial value of IX XX arrray in AMBER8? caoch_at_cherry.bio.titech.ac.jp (Sat May 14 2005 - 12:17:17 CDT)
- AMBER: Calculating of radius of gyration in Carnal Hwankyu Lee (Sat May 14 2005 - 13:36:37 CDT)
- Re: AMBER: Calculating of radius of gyration in Carnal Bill Ross (Sat May 14 2005 - 17:26:43 CDT)
- AMBER: how to reduce box size and delete excess solvent hj zou (Sun May 15 2005 - 06:51:32 CDT)
- AMBER: How to set constraint Li Su (Sun May 15 2005 - 13:58:51 CDT)
- Re: AMBER: how to reduce box size and delete excess solvent Bill Ross (Sun May 15 2005 - 14:50:01 CDT)
- AMBER: generating over 16 bps of DNA in nucgen Hwankyu Lee (Mon May 16 2005 - 10:33:04 CDT)
- AMBER: strange mm_pbsa.pl bug Nelson Fonseca (Mon May 16 2005 - 10:39:21 CDT)
- AMBER: How to set up dihedral constraints in amber Li Su (Mon May 16 2005 - 10:39:50 CDT)
- AMBER: output of force field info Stern, Julie (Mon May 16 2005 - 14:24:37 CDT)
- AMBER: nmode in mmpbsa Joseph Fernandez (Mon May 16 2005 - 18:36:28 CDT)
- AMBER: MMPBSA calculations on Highly charged systems Vitor Manuel Sousa F?x (Tue May 17 2005 - 06:01:21 CDT)
- AMBER: Message in .out file Atilio Anzellotti (Tue May 17 2005 - 07:31:36 CDT)
- AMBER: GAFF angle parameters Monica Civera (Tue May 17 2005 - 11:11:46 CDT)
- AMBER: compiling pmemd on dual xeon Tiziano Tuccinardi (Tue May 17 2005 - 12:28:31 CDT)
- AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN Rajeev Ranjan Singh (Tue May 17 2005 - 15:15:33 CDT)
- FW: Office XP - 60 dolars! coagulate Myra Cole (Tue May 17 2005 - 19:04:52 CDT)
- AMBER: RE: Tutorial#1 ptraj/sander problem Ross Walker (Tue May 17 2005 - 17:56:59 CDT)
- AMBER: MD on surface Yanze Zhang (Tue May 17 2005 - 18:58:29 CDT)
- AMBER: error with ptraj Xiaowei (David) Li (Tue May 17 2005 - 23:27:33 CDT)
- AMBER: loading pdb cbala_at_igib.res.in (Wed May 18 2005 - 00:56:13 CDT)
- AMBER: Using AMBER for Carbon nanotubes Zhang Yingyan (Wed May 18 2005 - 03:21:42 CDT)
- AMBER: error during MD run cbala_at_igib.res.in (Wed May 18 2005 - 13:39:25 CDT)
- AMBER: frcmod info for Nickel Kara Di Giorgio (Wed May 18 2005 - 14:04:44 CDT)
- AMBER: parameter for sulfur in thio-glucoside residue Vijay Manickam Achari (Wed May 18 2005 - 20:58:57 CDT)
- AMBER: Can we load prmtop and inpcrd files into xleap? Ilyas Yildirim (Wed May 18 2005 - 21:16:35 CDT)
- Re: AMBER: Can we load prmtop and inpcrd files into xleap? Kara Di Giorgio (Wed May 18 2005 - 21:45:43 CDT)
- Re: AMBER: Can we load prmtop and inpcrd files into xleap? Bill Ross (Wed May 18 2005 - 23:49:04 CDT)
- AMBER: Amber 8 and LAM compilation problem Glen Otero (Thu May 19 2005 - 00:52:00 CDT)
- AMBER: the out put I get... parameter for sulfur in thio-glucoside residue Vijay Manickam Achari (Thu May 19 2005 - 01:55:21 CDT)
- RE: AMBER: the out put I get... parameter for sulfur in thio-glucoside residue Ross Walker (Thu May 19 2005 - 02:16:41 CDT)
- Re: AMBER: the out put I get... parameter for sulfur in thio-glucoside residue Ilyas Yildirim (Thu May 19 2005 - 02:37:22 CDT)
- Re: AMBER: the out put I get... parameter for sulfur in thio-glucoside residue Cenk Andac (Thu May 19 2005 - 12:03:43 CDT)
- AMBER: GB - igb=1 versus dielc=? milion_at_c-box.cz (Thu May 19 2005 - 03:36:34 CDT)
- AMBER: write format of restart crd in sander/pmemd Peter Varnai (Thu May 19 2005 - 07:12:22 CDT)
- AMBER: Using amber4 generated prep files in amber8? Simon Whitehead (Thu May 19 2005 - 07:51:00 CDT)
- AMBER: read pdb back to xleap after solvation of chloroform chaiann ng (Thu May 19 2005 - 20:19:04 CDT)
- Re: AMBER: read pdb back to xleap after solvation of chloroform David A. Case (Thu May 19 2005 - 20:38:49 CDT)
- RE: AMBER: read pdb back to xleap after solvation of chloroform Ross Walker (Thu May 19 2005 - 20:41:31 CDT)
- RE: AMBER: read pdb back to xleap after solvation of chloroform Bill Ross (Thu May 19 2005 - 21:16:22 CDT)
- RE: AMBER: read pdb back to xleap after solvation of chloroform Bill Ross (Thu May 19 2005 - 22:56:58 CDT)
- Re: AMBER: read pdb back to xleap after solvation of chloroform Furse, Kristina Elisabet (Fri May 20 2005 - 16:20:55 CDT)
- AMBER: MM_PBSA for NMR restrained structures Cenk Andac (Fri May 20 2005 - 03:36:10 CDT)
- AMBER: leap problem: savepdb Hannes Barsch (Fri May 20 2005 - 04:30:29 CDT)
- AMBER: how to creat leaprc.gaff Vijay Manickam Achari (Fri May 20 2005 - 04:36:25 CDT)
- AMBER: Error in minimization Priti Hansia (Fri May 20 2005 - 05:58:36 CDT)
- Re: AMBER: Representation of cations in MD David A. Case (Fri May 20 2005 - 10:16:15 CDT)
- AMBER: Steve Seibold (Fri May 20 2005 - 12:45:24 CDT)
- AMBER: crashing xleap Kenley Barrett (Fri May 20 2005 - 13:48:13 CDT)
- AMBER: 1-4 scaling factors Stern, Julie (Fri May 20 2005 - 14:13:22 CDT)
- Re: AMBER: crashing xleap Bill Ross (Fri May 20 2005 - 14:55:15 CDT)
- AMBER: Citing the PBSA module of AMBER8 Cenk Andac (Fri May 20 2005 - 16:27:03 CDT)
- AMBER: modeller Zhang Bing (Fri May 20 2005 - 23:53:13 CDT)
- AMBER: rotating and repositioning molecules in xleap Hwankyu Lee (Sat May 21 2005 - 01:09:45 CDT)
- AMBER: Copyright for PBSA Cenk Andac (Sat May 21 2005 - 03:32:00 CDT)
- AMBER: Unexpected stop of Sander run Grzegorz Jezierski (Sun May 22 2005 - 14:44:55 CDT)
- Re: AMBER: Unexpected stop of Sander run Bill Ross (Sun May 22 2005 - 15:18:16 CDT)
- AMBER: Error in sander: stack trace terminated abnormally. Hwankyu Lee (Sun May 22 2005 - 16:05:31 CDT)
- AMBER: antechamber not working .. for thio residue.. Vijay Manickam Achari (Sun May 22 2005 - 21:15:20 CDT)
- AMBER: Setting Amber force field parameters Chen Chengwen (Mon May 23 2005 - 02:55:38 CDT)
- AMBER: using antechamber ... to get prepin file Vijay Manickam Achari (Mon May 23 2005 - 03:59:16 CDT)
- AMBER: Connecting two molecules Hwankyu Lee (Mon May 23 2005 - 10:13:00 CDT)
- AMBER: how to generate frcmod file for using prepin file.. Vijay Manickam Achari (Mon May 23 2005 - 21:52:18 CDT)
- AMBER: my frcmod file created using parmchk Vijay Manickam Achari (Mon May 23 2005 - 22:44:21 CDT)
- AMBER: my prepin file in lowe-case Vijay Manickam Achari (Tue May 24 2005 - 02:51:55 CDT)
- AMBER: Which forcefield? Simon Whitehead (Tue May 24 2005 - 03:13:01 CDT)
- AMBER: conformational sampling of a peptide Hannes Barsch (Tue May 24 2005 - 03:58:04 CDT)
- AMBER: amber code Juan Fernandez Carmona (Tue May 24 2005 - 05:08:00 CDT)
- Re: AMBER: conformational sampling of a peptide Carlos Simmerling (Tue May 24 2005 - 08:11:53 CDT)
- AMBER: Fw: Installing PMEMD on IBM machine (CPU power4) running SUSE_9.1 Robert Duke (Tue May 24 2005 - 09:42:15 CDT)
- AMBER: Amber 8 : installation problems : undefined reference to `mpi_allreduce_' René Ranzinger (Tue May 24 2005 - 10:04:42 CDT)
- AMBER: Sander Restart Problem Garhan Attebury (Tue May 24 2005 - 10:07:49 CDT)
- AMBER: How to fix certain bond angles Li Su (Tue May 24 2005 - 10:27:14 CDT)
- AMBER: Error: vlimit exceeded for step Hwankyu Lee (Tue May 24 2005 - 12:20:10 CDT)
- Re: AMBER: Error: vlimit exceeded for step Carlos Simmerling (Tue May 24 2005 - 12:51:14 CDT)
- Re: AMBER: Error: vlimit exceeded for step Hwankyu Lee (Tue May 24 2005 - 13:07:41 CDT)
- Re: AMBER: Error: vlimit exceeded for step Thomas E. Cheatham, III (Tue May 24 2005 - 13:12:58 CDT)
- Re: AMBER: Error: vlimit exceeded for step Hwankyu Lee (Tue May 24 2005 - 13:34:34 CDT)
- Re: AMBER: Error: vlimit exceeded for step David Mobley (Tue May 24 2005 - 14:27:23 CDT)
- AMBER: Error: vlimit exceeded for step Hwankyu Lee (Mon Jun 06 2005 - 08:55:57 CDT)
- RE: AMBER: Error: vlimit exceeded for step Ross Walker (Mon Jun 06 2005 - 12:19:04 CDT)
- Re: AMBER: Error: vlimit exceeded for step Hwankyu Lee (Mon Jun 06 2005 - 17:47:29 CDT)
- Re: AMBER: Error: vlimit exceeded for step Hwankyu Lee (Mon Jun 06 2005 - 18:26:16 CDT)
- RE: AMBER: Error: vlimit exceeded for step Ross Walker (Mon Jun 06 2005 - 18:24:21 CDT)
- Re: AMBER: Error: vlimit exceeded for step Hwankyu Lee (Mon Jun 06 2005 - 18:48:56 CDT)
- RE: AMBER: Error: vlimit exceeded for step Ross Walker (Mon Jun 06 2005 - 22:49:05 CDT)
- Re: AMBER: Error: vlimit exceeded for step Bill Ross (Mon Jun 06 2005 - 19:03:38 CDT)
- Re: AMBER: Error: vlimit exceeded for step Hwankyu Lee (Tue May 24 2005 - 13:07:41 CDT)
- Re: AMBER: Error: vlimit exceeded for step Carlos Simmerling (Tue May 24 2005 - 12:51:14 CDT)
- Solute-solvent boundary in pbsa ..Re: AMBER: Copyright for PBSA Cenk Andac (Tue May 24 2005 - 13:48:26 CDT)
- AMBER: Is Amber able to constrain(not restrain) certain angles at certain values? Li Su (Tue May 24 2005 - 14:14:09 CDT)
- AMBER: charges difference of atom in xleap and prmtop chaiann ng (Tue May 24 2005 - 23:02:33 CDT)
- AMBER: PARMSCAN program Philippe ARNAUD (Wed May 25 2005 - 02:28:31 CDT)
- AMBER: average structure after MD kuljeets_at_igib.res.in (Wed May 25 2005 - 04:14:19 CDT)
- AMBER: quadrupole in resp riccardo nifosi (Wed May 25 2005 - 05:44:20 CDT)
- AMBER: error in chirality.c? Kenley Barrett (Wed May 25 2005 - 09:27:07 CDT)
- Re#2:Re: AMBER: Solute-solvent boundary in pbsa Cenk Andac (Wed May 25 2005 - 15:03:47 CDT)
- AMBER: dissolving micelle structure in water.. amber7 Vijay Manickam Achari (Wed May 25 2005 - 22:59:22 CDT)
- Re: AMBER: dissolving micelle structure in water.. amber7 David A. Case (Thu May 26 2005 - 11:30:17 CDT)
- Re: AMBER: dissolving micelle structure in water.. amber7 Bill Ross (Thu May 26 2005 - 11:50:23 CDT)
- Re: AMBER: dissolving micelle structure in water.. amber7 Vijay Manickam Achari (Thu May 26 2005 - 20:19:57 CDT)
- AMBER: distance restraints between two centers of mass JAVIER PEREZ (Thu May 26 2005 - 03:37:30 CDT)
- AMBER: Is the MD simulation normal Shulin Zhuang (Thu May 26 2005 - 10:30:48 CDT)
- RE: AMBER: Is the MD simulation normal Yong Duan (Thu May 26 2005 - 12:05:14 CDT)
- Re: AMBER: Is the MD simulation normal Thomas E. Cheatham, III (Thu May 26 2005 - 12:41:03 CDT)
- Re: AMBER: Is the MD simulation normal Bill Ross (Fri May 27 2005 - 13:14:30 CDT)
- Re: AMBER: Is the MD simulation normal Bill Ross (Sat May 28 2005 - 12:00:42 CDT)
- Re: AMBER: Is the MD simulation normal Bill Ross (Sun May 29 2005 - 10:33:13 CDT)
- RE: AMBER: Is the MD simulation normal Bill Ross (Sun May 29 2005 - 12:04:01 CDT)
- Re: AMBER: Is the MD simulation normal Bill Ross (Mon May 30 2005 - 11:49:32 CDT)
- Re: AMBER: Is the MD simulation normal Bill Ross (Tue May 31 2005 - 22:41:42 CDT)
- Re: AMBER: Is the MD simulation normal Shulin Zhuang (Wed Jun 29 2005 - 05:11:53 CDT)
- AMBER: setting up Parallel processing mathew k varghese (Thu May 26 2005 - 10:39:00 CDT)
- AMBER: hbond analysis in ptaj/carnal Jana Precechtelova (Thu May 26 2005 - 11:25:20 CDT)
- Re: AMBER: hbond analysis in ptaj/carnal Bill Ross (Thu May 26 2005 - 11:44:13 CDT)
- AMBER: why is snaupe.f is empty? Cordova, Luis E. (Thu May 26 2005 - 12:06:24 CDT)
- AMBER: ptraj - hbond detailed analysis over time? pascal.baillod_at_epfl.ch (Thu May 26 2005 - 12:38:38 CDT)
- AMBER: Mol2 to prepin file conversion Andrew Box (Thu May 26 2005 - 19:08:22 CDT)
- AMBER: question about loadiing pdb file of a molecule complex gtg549i_at_mail.gatech.edu (Fri May 27 2005 - 16:39:28 CDT)
- Re: AMBER: question about loadiing pdb file of a molecule complex Chutintorn Punwong (Fri May 27 2005 - 17:07:52 CDT)
- Re: AMBER: question about loadiing pdb file of a molecule complex David A. Case (Sun May 29 2005 - 00:29:53 CDT)
- AMBER: Workshop Tutorials Downtime this weekend. Ross Walker (Fri May 27 2005 - 16:49:05 CDT)
- AMBER: Antechamber RESP failed for large organic molecule junwang (Sun May 29 2005 - 14:57:59 CDT)
- Re: AMBER: Antechamber RESP failed for large organic molecule David A. Case (Mon May 30 2005 - 11:09:27 CDT)
- RE: AMBER: Antechamber RESP failed for large organic molecule Junmei Wang (Tue May 31 2005 - 09:37:35 CDT)
- AMBER: question about initial conditions for amber Ed Pate (Sun May 29 2005 - 21:42:21 CDT)
- AMBER: density profiles in ptraj or carnal Hwankyu Lee (Sun May 29 2005 - 22:27:37 CDT)
- AMBER: pairwise energy decomposition using MM-PBSA Xin Hu (Sun May 29 2005 - 22:38:30 CDT)
- AMBER: Force field modification problem yuann (Mon May 30 2005 - 06:16:27 CDT)
- AMBER: Bond angle restraints setting files Li Su (Mon May 30 2005 - 11:05:15 CDT)
- Re: AMBER: density profiles in ptraj or carnal Bill Ross (Mon May 30 2005 - 12:00:08 CDT)
- AMBER: density problem cristian obiol (Tue May 31 2005 - 04:17:46 CDT)
- AMBER: stack terminated abnormally drugdesign (Tue May 31 2005 - 05:20:33 CDT)
- AMBER: if setting ntf=4, will it cause someproblem? Li Su (Tue May 31 2005 - 09:55:03 CDT)
- AMBER: Error on restrained MD equilibration (AMBER 7) L Jin (Tue May 31 2005 - 10:23:51 CDT)
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) David A. Case (Tue May 31 2005 - 10:45:01 CDT)
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) Viktor Hornak (Tue May 31 2005 - 10:52:48 CDT)
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) L Jin (Tue May 31 2005 - 11:21:55 CDT)
- RE: AMBER: Error on restrained MD equilibration (AMBER 7) Ross Walker (Tue May 31 2005 - 11:45:19 CDT)
- AMBER: runtime error in sander? Dave S Walker (Tue May 31 2005 - 12:07:13 CDT)
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) Guanglei Cui (Tue May 31 2005 - 14:02:46 CDT)
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) Shulin Zhuang (Tue May 31 2005 - 20:36:32 CDT)
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) L Jin (Wed Jun 01 2005 - 05:24:12 CDT)
- Re: AMBER: Error on restrained MD equilibration (AMBER 7) Guanglei Cui (Wed Jun 01 2005 - 09:18:37 CDT)
- AMBER: DNA base-flipping: TI vs PMF Lauren O'Neil (Tue May 31 2005 - 10:40:45 CDT)
- AMBER: Failure of Periodic Boundary Conditions using LEAP in AMBER8 with "OldPrmtopFormat on" Grzegorz Jezierski (Tue May 31 2005 - 11:04:20 CDT)
- AMBER: MM-PBSA calculation masi_at_nmr.mpibpc.mpg.de (Tue May 31 2005 - 11:37:40 CDT)
- AMBER: STOP 0 masi_at_nmr.mpibpc.mpg.de (Tue May 31 2005 - 11:40:25 CDT)
- AMBER:Sander errors: Unit 6 Error on OPEN: mdout Douali, Latifa (Tue May 31 2005 - 12:34:41 CDT)
- Re: AMBER: STOP 0 Bill Ross (Tue May 31 2005 - 12:43:32 CDT)
- AMBER: meaningful tax for sander question Cordova, Luis E. (Tue May 31 2005 - 14:19:30 CDT)
- Re: AMBER: meaningful tax for sander question David A. Case (Tue May 31 2005 - 14:59:20 CDT)
- RE: AMBER: meaningful tax for sander question Ross Walker (Tue May 31 2005 - 14:55:14 CDT)
- RE: AMBER: meaningful tax for sander question Cordova, Luis E. (Tue May 31 2005 - 15:03:59 CDT)
- RE: AMBER: meaningful tax for sander question Ross Walker (Tue May 31 2005 - 15:12:10 CDT)
- AMBER: double counting of potentials Stern, Julie (Tue May 31 2005 - 18:04:43 CDT)
- AMBER: Working with a nickel-organometallic compound Kara Di Giorgio (Tue May 31 2005 - 18:36:30 CDT)
- AMBER: External Field in AMBER? junwang (Tue May 31 2005 - 21:19:38 CDT)
- AMBER: problem in minimization Ananda Rama Krishnan Selvaraj (Wed Jun 01 2005 - 03:48:46 CDT)
- AMBER: Saturated DNA bases L.C. Heady (Wed Jun 01 2005 - 03:55:54 CDT)
- AMBER: eigenvalues in vector of ptraj Hwankyu Lee (Wed Jun 01 2005 - 07:53:51 CDT)
- AMBER: stripwater Lukasz Bielecki (Wed Jun 01 2005 - 09:16:05 CDT)
- AMBER: Build of AMBER for YDL ? Gert Kiss (Wed Jun 01 2005 - 18:15:57 CDT)
- AMBER: gaff.dat typo Brent Krueger (Wed Jun 01 2005 - 20:35:58 CDT)
- AMBER: amber question about leap du yongchun (Thu Jun 02 2005 - 00:12:12 CDT)
- AMBER: amber8 installation problems Zhang Bing (Thu Jun 02 2005 - 01:44:47 CDT)
- AMBER: amber8 installation problems Zhang Bing (Thu Jun 02 2005 - 01:55:48 CDT)
- AMBER: question whem using leap du yongchun (Thu Jun 02 2005 - 02:25:16 CDT)
- AMBER: Argon Box Biswaroop Mukherjee (Thu Jun 02 2005 - 03:44:46 CDT)
- AMBER: center-of-mass distance restraints JAVIER PEREZ (Thu Jun 02 2005 - 06:14:15 CDT)
- AMBER: Simon Whitehead (Thu Jun 02 2005 - 07:44:03 CDT)
- AMBER: Protein ions? Anthony Cruz (Thu Jun 02 2005 - 09:12:56 CDT)
- AMBER: How does Amber8 implemnet ntf=4? Li Su (Thu Jun 02 2005 - 10:32:30 CDT)
- AMBER: checkoverlap Gustavo Pierdominici Sottile (Thu Jun 02 2005 - 12:45:19 CDT)
- AMBER: pressure output Germán Sciaini (Thu Jun 02 2005 - 17:27:13 CDT)
- AMBER: advice needed for minimization and dynamic protocol chaiann ng (Thu Jun 02 2005 - 20:33:44 CDT)
- AMBER: New problem of parallel sander Zhang Bing (Thu Jun 02 2005 - 21:46:13 CDT)
- AMBER: TI in Amber8 ˝¨Ć˝ şú (Fri Jun 03 2005 - 04:49:02 CDT)
- AMBER: Nmode with residues excluded Martin Sippel (Fri Jun 03 2005 - 11:56:42 CDT)
- AMBER: Nmode calculations Martin Sippel (Fri Jun 03 2005 - 12:17:48 CDT)
- AMBER: radius parameter for Mg2+ in mm_pbsa calculation Ye Mei (Sat Jun 04 2005 - 09:37:04 CDT)
- AMBER: SHAKE in md with partial solvation Ye Mei (Sun Jun 05 2005 - 02:30:00 CDT)
- AMBER: fail of minimization in sander wendy (Sun Jun 05 2005 - 22:01:25 CDT)
- Re: AMBER: fail of minimization in sander wendy (Mon Jun 06 2005 - 05:06:01 CDT)
- Re: AMBER: fail of minimization in sander Bill Ross (Mon Jun 06 2005 - 09:34:39 CDT)
- Re: AMBER: fail of minimization in sander wendy (Mon Jun 06 2005 - 11:13:10 CDT)
- RE: AMBER: fail of minimization in sander Ross Walker (Mon Jun 06 2005 - 12:25:26 CDT)
- Re: AMBER: fail of minimization in sander wendy (Wed Jun 15 2005 - 02:54:59 CDT)
- Re: AMBER: fail of minimization in sander Carlos Simmerling (Wed Jun 15 2005 - 06:24:04 CDT)
- Re: AMBER: fail of minimization in sander wendy (Thu Jun 16 2005 - 03:19:15 CDT)
- Re: AMBER: fail of minimization in sander Carlos Simmerling (Thu Jun 16 2005 - 06:06:42 CDT)
- Re: AMBER: fail of minimization in sander wendy (Thu Jun 16 2005 - 21:43:11 CDT)
- Re: AMBER: fail of minimization in sander David A. Case (Thu Jun 16 2005 - 09:44:21 CDT)
- Re: AMBER: fail of minimization in sander wendy (Mon Jun 06 2005 - 11:13:10 CDT)
- Re: AMBER: fail of minimization in sander Bill Ross (Mon Jun 06 2005 - 12:58:54 CDT)
- Re: AMBER: fail of minimization in sander Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) (Wed Jun 15 2005 - 06:05:25 CDT)
- Re: AMBER: fail of minimization in sander Bill Ross (Sun Jun 05 2005 - 22:50:48 CDT)
- AMBER: nmode with ibelly Martin Sippel (Mon Jun 06 2005 - 04:38:42 CDT)
- AMBER: Solvate question? Anthony Cruz (Mon Jun 06 2005 - 05:30:44 CDT)
- AMBER: Re: Re: AMBER: SHAKE in md with partial solvation Ye Mei (Mon Jun 06 2005 - 05:49:44 CDT)
- AMBER: Compile question?? Anthony Cruz (Mon Jun 06 2005 - 06:59:13 CDT)
- AMBER: Solvents Anthony Cruz (Mon Jun 06 2005 - 11:00:07 CDT)
- AMBER: GB/SA/LD parallel sander Lwin, ThuZar (Mon Jun 06 2005 - 11:48:27 CDT)
- AMBER: eelnb Stern, Julie (Mon Jun 06 2005 - 15:16:31 CDT)
- AMBER: Protein dynamics. Laurence Lavelle (Mon Jun 06 2005 - 16:43:50 CDT)
- AMBER: segmentation fault in sander Kenley Barrett (Mon Jun 06 2005 - 17:07:59 CDT)
- Re: AMBER: segmentation fault in sander Bill Ross (Mon Jun 06 2005 - 17:18:45 CDT)
- AMBER: Gibbs perturb DNA strands separate ivan_at_mmb.pcb.ub.es (Tue Jun 07 2005 - 06:16:41 CDT)
- AMBER: nucgen problem cbala_at_igib.res.in (Tue Jun 07 2005 - 08:41:27 CDT)
- AMBER: Question about tutorial-9 Varsha Goyal (Tue Jun 07 2005 - 11:27:57 CDT)
- Re: AMBER: nucgen problem Bill Ross (Tue Jun 07 2005 - 11:47:42 CDT)
- AMBER: AMBER frcmod+off input vs. prep input K. Yarem (Tue Jun 07 2005 - 11:57:19 CDT)
- Re: AMBER: AMBER frcmod+off input vs. prep input Bill Ross (Tue Jun 07 2005 - 12:58:06 CDT)
- AMBER: TI calculation using sander Latifa Douali (Tue Jun 07 2005 - 19:10:54 CDT)
- AMBER: How to run amber more efficiently? alice (Tue Jun 07 2005 - 21:59:26 CDT)
- AMBER: Protein dynamics. Laurence Lavelle (Wed Jun 08 2005 - 00:52:00 CDT)
- AMBER: Sander is changing directories Andreas Kerzmann (Wed Jun 08 2005 - 04:37:58 CDT)
- AMBER: Sander is changing directories Andreas Kerzmann (Wed Jun 08 2005 - 04:39:23 CDT)
- AMBER: total energy leaps cristian obiol (Wed Jun 08 2005 - 05:44:18 CDT)
- AMBER: TI tutorial in Amber 8 huhu (Wed Jun 08 2005 - 04:52:24 CDT)
- AMBER: (no subject) Mohammed Mayeed (Wed Jun 08 2005 - 12:26:15 CDT)
- AMBER: Protein-surface interaction Mohammed Mayeed (Wed Jun 08 2005 - 13:37:30 CDT)
- AMBER: GB/SA/LD parallel sander Lwin, ThuZar (Wed Jun 08 2005 - 14:36:41 CDT)
- AMBER: Compile Problems of Parallel Amber8 on Mac G5 Suxin Zheng (Wed Jun 08 2005 - 18:02:23 CDT)
- AMBER: precision switch from 64 to 32 bit (double from single precision) Cordova, Luis E. (Thu Jun 09 2005 - 00:39:59 CDT)
- AMBER: normal mode mm/pbsa interupted Eric Hu (Thu Jun 09 2005 - 13:46:04 CDT)
- AMBER: setting up restraint with ntr option Lwin, ThuZar (Thu Jun 09 2005 - 16:49:04 CDT)
- AMBER: transfer data from Linux to windows gtg549i_at_mail.gatech.edu (Thu Jun 09 2005 - 17:24:05 CDT)
- Re: AMBER: transfer data from Linux to windows Lihua Wang (Thu Jun 09 2005 - 17:32:14 CDT)
- Re: AMBER: transfer data from Linux to windows Carlos Simmerling (Thu Jun 09 2005 - 17:41:26 CDT)
- Re: AMBER: transfer data from Linux to windows Thomas Patko (Thu Jun 09 2005 - 17:49:02 CDT)
- AMBER: Make Distance restraints for non-standard residues gtg549i_at_mail.gatech.edu (Fri Jun 10 2005 - 10:47:41 CDT)
- Re: AMBER: setting up restraint with ntr option Viktor Hornak (Thu Jun 09 2005 - 18:53:05 CDT)
- AMBER: transfer data from Linux to windows gtg549i_at_mail.gatech.edu (Thu Jun 09 2005 - 17:24:05 CDT)
- AMBER: atom type for -CH=CH- Qizhi Cui (Thu Jun 09 2005 - 20:46:13 CDT)
- AMBER: substitute missing residues? Wai Keat Yam (Fri Jun 10 2005 - 03:20:29 CDT)
- AMBER: Vibrational spectrum? milion_at_c-box.cz (Fri Jun 10 2005 - 03:31:27 CDT)
- AMBER: SOURCE3 in gaff.dat Stern, Julie (Fri Jun 10 2005 - 04:40:20 CDT)
- AMBER: vdw for terminal phosphate Rhoad, Jonathan S. (Fri Jun 10 2005 - 11:16:47 CDT)
- Re: AMBER: vdw for terminal phosphate Bill Ross (Fri Jun 10 2005 - 13:10:32 CDT)
- AMBER: Can constant pH be used for minimization? Kenley Barrett (Fri Jun 10 2005 - 16:34:41 CDT)
- AMBER: inpcrd file Douali, Latifa (Fri Jun 10 2005 - 18:04:24 CDT)
- AMBER: Installation problem Sukjoon Yoon (Sun Jun 12 2005 - 04:21:50 CDT)
- Re: AMBER: Installation problem Chris Harrison (Sun Jun 12 2005 - 18:04:22 CDT)
- Re: AMBER: Installation problem. . Don.Bashford_at_stjude.org (Mon Jun 13 2005 - 12:56:46 CDT)
- AMBER: Installation problem. . Sukjoon Yoon (Wed Jun 15 2005 - 01:08:51 CDT)
- Re: AMBER: Installation problem. . Andreas Svrcek-Seiler (Wed Jun 15 2005 - 07:31:46 CDT)
- RE: AMBER: Installation problem. . Ross Walker (Wed Jun 15 2005 - 11:46:25 CDT)
- AMBER: Installation problem. . Sukjoon Yoon (Thu Jun 16 2005 - 09:49:19 CDT)
- Re: AMBER: Installation problem. . Mark Williamson (Thu Jun 16 2005 - 10:06:57 CDT)
- Re: AMBER: Installation problem. . Mark Williamson (Thu Jun 16 2005 - 10:15:58 CDT)
- Re: AMBER: Installation problem. . Andreas Svrcek-Seiler (Thu Jun 16 2005 - 23:54:42 CDT)
- RE: AMBER: Installation problem. . Ross Walker (Fri Jun 17 2005 - 11:33:42 CDT)
- RE: AMBER: Installation problem. . Andreas Svrcek-Seiler (Fri Jun 17 2005 - 12:12:10 CDT)
- RE: AMBER: Installation problem - wrong address Andreas Svrcek-Seiler (Fri Jun 17 2005 - 12:28:43 CDT)
- RE: AMBER: Installation problem. . Ross Walker (Fri Jun 17 2005 - 12:39:15 CDT)
- AMBER: nonbond_list question . caoch_at_cherry.bio.titech.ac.jp (Fri Jun 17 2005 - 20:38:27 CDT)
- Re: AMBER: nonbond_list question . Michael Crowley (Sat Jun 18 2005 - 14:51:01 CDT)
- Re: AMBER: nonbond_list question . Robert Duke (Sat Jun 18 2005 - 22:03:07 CDT)
- Re: AMBER: nonbond_list question . Petr Kulhanek (Sun Jun 19 2005 - 05:06:31 CDT)
- Re: AMBER: nonbond_list question . Robert Duke (Sun Jun 19 2005 - 09:25:37 CDT)
- AMBER: Installation problem. . Sukjoon Yoon (Wed Jun 15 2005 - 01:08:51 CDT)
- AMBER: no corrected reaction field energy in *.out files after running mm_pbsa haixiao jin (Sun Jun 12 2005 - 21:04:40 CDT)
- AMBER: how to pull out frames Vijay Manickam Achari (Mon Jun 13 2005 - 00:23:51 CDT)
- AMBER: leap issues on a powerbook justin litchfield (Sun Jun 12 2005 - 18:21:02 CDT)
- AMBER: Need help in charge fitting through RESP S.Sundar Raman (Mon Jun 13 2005 - 08:55:29 CDT)
- AMBER: Announcing the LMOD website Istvan Kolossvary (Mon Jun 13 2005 - 13:18:52 CDT)
- AMBER: GBSA and thermodynamic ensemble Osmar Norberto de Souza (Mon Jun 13 2005 - 13:29:18 CDT)
- AMBER: atom type question opitz_at_che.udel.edu (Mon Jun 13 2005 - 14:41:30 CDT)
- AMBER: why the dipeptide always moving out the virtual box Li Su (Mon Jun 13 2005 - 16:40:47 CDT)
- AMBER: Restrained-MD Ananda Rama Krishnan Selvaraj (Mon Jun 13 2005 - 18:04:14 CDT)
- AMBER: nmropt =1 AND ntr=1 in pmemd Christoph Brockmann (Tue Jun 14 2005 - 04:33:39 CDT)
- AMBER: compiler Zhang Bing (Tue Jun 14 2005 - 03:14:08 CDT)
- AMBER: creating pdb file.... Vijay Manickam Achari (Tue Jun 14 2005 - 05:49:09 CDT)
- AMBER: compiler Zhang Bing (Tue Jun 14 2005 - 06:13:19 CDT)
- AMBER: time and lifetime in hbond analysis (ptraj) Giulio Rastelli (Tue Jun 14 2005 - 09:23:50 CDT)
- AMBER: Request for g98 (IOP...) Paramasivam Manikandan (Tue Jun 14 2005 - 10:04:30 CDT)
- AMBER: sp2 carbon atom parametrization Gustavo Pierdominici Sottile (Tue Jun 14 2005 - 11:30:16 CDT)
- AMBER: Extended bonds-MD Ananda Rama Krishnan Selvaraj (Tue Jun 14 2005 - 11:29:29 CDT)
- AMBER: Free Energy Calculation torsion missing mrbroad_at_ilstu.edu (Tue Jun 14 2005 - 13:21:54 CDT)
- AMBER: puzzling gaff parameter Oliver Hucke (Tue Jun 14 2005 - 20:16:35 CDT)
- AMBER: Thanks Zhang Bing (Tue Jun 14 2005 - 21:26:23 CDT)
- AMBER: solutions of amber installation problems Zhang Bing (Tue Jun 14 2005 - 21:42:13 CDT)
- AMBER: Extended bonds-MD Ananda Rama Krishnan Selvaraj (Wed Jun 15 2005 - 02:02:25 CDT)
- AMBER: bad atom type: H alice (Wed Jun 15 2005 - 05:53:50 CDT)
- AMBER: Question about "quasih" Yen-Ting Lai (Wed Jun 15 2005 - 11:46:22 CDT)
- AMBER: position of protonation info from constant pH run Kenley Barrett (Wed Jun 15 2005 - 20:27:44 CDT)
- AMBER: Cut pdb files Yogesh Sabnis (Thu Jun 16 2005 - 02:57:18 CDT)
- AMBER: adenine test for LMOD in amber8 Giulio Rastelli (Thu Jun 16 2005 - 04:57:16 CDT)
- AMBER: How to modify force constants and equalibrium values for standard residues Li Su (Thu Jun 16 2005 - 08:30:41 CDT)
- Re: AMBER: How to modify force constants and equalibrium values for standard residues David A. Case (Thu Jun 16 2005 - 09:41:18 CDT)
- RE: AMBER: How to modify force constants and equalibrium values for standard residues Ross Walker (Thu Jun 16 2005 - 16:05:33 CDT)
- Re: AMBER: How to modify force constants and equalibrium values for standard residues gsciaini (Fri Jun 17 2005 - 08:41:44 CDT)
- AMBER: Question about GAFF atom types Herbert Georg (Thu Jun 16 2005 - 14:18:50 CDT)
- Re: AMBER: Question about GAFF atom types Herbert Georg (Fri Jun 17 2005 - 14:49:53 CDT)
- Re: AMBER: Question about GAFF atom types Ilyas Yildirim (Fri Jun 17 2005 - 15:42:18 CDT)
- Re: AMBER: Question about GAFF atom types Herbert Georg (Fri Jun 17 2005 - 17:31:52 CDT)
- Re: AMBER: Question about GAFF atom types Ilyas Yildirim (Fri Jun 17 2005 - 20:29:24 CDT)
- Re: AMBER: Question about GAFF atom types Herbert Georg (Mon Jun 20 2005 - 11:47:38 CDT)
- Re: AMBER: Question about GAFF atom types Ilyas Yildirim (Mon Jun 20 2005 - 14:51:59 CDT)
- AMBER: PBSA error: PB bomb in pd_aaradi Xin Hu (Wed Jun 22 2005 - 09:34:13 CDT)
- Re: AMBER: PBSA error: PB bomb in pd_aaradi JunJun Liu (Wed Jun 22 2005 - 10:17:43 CDT)
- Re: AMBER: Question about GAFF atom types Ilyas Yildirim (Fri Jun 17 2005 - 15:42:18 CDT)
- Re: AMBER: Question about GAFF atom types Herbert Georg (Fri Jun 17 2005 - 14:49:53 CDT)
- AMBER: For calculating the energy rised from deviation of equalibrium values of bond angles does amber use degree or radians Li Su (Thu Jun 16 2005 - 16:19:36 CDT)
- AMBER: antechamber problems hj zou (Fri Jun 17 2005 - 08:32:27 CDT)
- AMBER: RE: AMBER :LINMIN problem Ross Walker (Fri Jun 17 2005 - 13:27:25 CDT)
- AMBER: Analysing my simulation data.. Vijay Manickam Achari (Sat Jun 18 2005 - 03:32:13 CDT)
- AMBER: antechamber problems hj zou (Sun Jun 19 2005 - 08:50:08 CDT)
- AMBER: average structure emilia wu (Sun Jun 19 2005 - 19:15:53 CDT)
- AMBER: How to set the virtual box size for a calculation run in vacuum Li Su (Mon Jun 20 2005 - 08:27:33 CDT)
- AMBER: How to turn off pme when using periodic box Li Su (Mon Jun 20 2005 - 13:31:09 CDT)
- AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Ilyas Yildirim (Mon Jun 20 2005 - 20:51:11 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends FyD (Wed Jun 22 2005 - 16:56:30 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Ilyas Yildirim (Wed Jun 22 2005 - 17:13:19 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Ilyas Yildirim (Wed Jul 06 2005 - 17:24:45 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Ilyas Yildirim (Wed Jul 06 2005 - 22:18:46 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Qing Zhang (Thu Jul 07 2005 - 03:30:14 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Ilyas Yildirim (Thu Jul 07 2005 - 16:56:14 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Qing Zhang (Thu Jul 07 2005 - 19:48:40 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Ilyas Yildirim (Mon Jul 11 2005 - 20:25:00 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends Qing Zhang (Tue Jul 12 2005 - 14:59:01 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends FyD (Thu Jul 07 2005 - 10:54:00 CDT)
- Re: AMBER: RESP charges of RNA nucleotides with 3' and 5' ends FyD (Wed Jun 22 2005 - 16:56:30 CDT)
- AMBER: large std error in entropy estimation Ye Mei (Tue Jun 21 2005 - 21:51:43 CDT)
- AMBER: a question about varying positions of dihedral restraints with step number Li Su (Wed Jun 22 2005 - 14:42:02 CDT)
- AMBER: question about Carnal opitz_at_che.udel.edu (Wed Jun 22 2005 - 15:03:45 CDT)
- Re: AMBER: question about Carnal Bill Ross (Wed Jun 22 2005 - 15:51:34 CDT)
- AMBER: RE: tutorial 8 Ross Walker (Wed Jun 22 2005 - 16:15:33 CDT)
- AMBER: software for real polymer MD simulation xhu1_at_memphis.edu (Wed Jun 22 2005 - 16:31:51 CDT)
- AMBER: how the phosphated threonine to be recognized in leap haixiao jin (Thu Jun 23 2005 - 04:03:26 CDT)
- AMBER: Parameters for phosphorylated amino acids Nadine Homeyer (Thu Jun 23 2005 - 08:54:22 CDT)
- AMBER: Parameters for phosphorylated amino acids Nadine Homeyer (Thu Jun 23 2005 - 09:24:08 CDT)
- AMBER: GCC for AMBER on 64 bit machine mfyang (Thu Jun 23 2005 - 12:55:01 CDT)
- AMBER: using xmgrace.... Vijay Manickam Achari (Thu Jun 23 2005 - 21:51:37 CDT)
- AMBER: Have the parameters for dUMP been calculated by somebody? Suxin Zheng (Fri Jun 24 2005 - 20:30:12 CDT)
- AMBER: TI-FEP for ALA --> GLY Jiten (Sat Jun 25 2005 - 00:07:03 CDT)
- Re: AMBER: TI-FEP for ALA --> GLY Ilyas Yildirim (Sat Jun 25 2005 - 01:48:36 CDT)
- Re: AMBER: TI-FEP for VAL --> ALA Jiten (Sat Jun 25 2005 - 11:13:44 CDT)
- Re: AMBER: TI-FEP for VAL --> ALA Ilyas Yildirim (Sat Jun 25 2005 - 18:39:11 CDT)
- Re: AMBER: TI-FEP for VAL --> ALA Jiten (Sun Jun 26 2005 - 21:11:03 CDT)
- Re: AMBER: TI-FEP for VAL --> ALA Ilyas Yildirim (Mon Jun 27 2005 - 18:43:16 CDT)
- Re: AMBER: TI-FEP for ALA --> GLY Jiten (Mon Jun 27 2005 - 21:24:56 CDT)
- Re: AMBER: TI-FEP for ALA --> GLY Ilyas Yildirim (Tue Jun 28 2005 - 00:46:17 CDT)
- AMBER: Re: TI tutorial Jiten (Tue Jun 28 2005 - 09:17:39 CDT)
- Re: AMBER: Re: TI tutorial David A. Case (Tue Jun 28 2005 - 10:49:53 CDT)
- Re: AMBER: Re: TI tutorial Jiten (Tue Jun 28 2005 - 11:36:59 CDT)
- Re: AMBER: Re: TI tutorial David A. Case (Tue Jun 28 2005 - 20:09:44 CDT)
- Re: AMBER: Re: TI tutorial Jiten (Tue Jun 28 2005 - 22:46:17 CDT)
- Re: AMBER: Re: TI tutorial David A. Case (Wed Jun 29 2005 - 09:30:31 CDT)
- Re: AMBER: Re: TI tutorial Jiten (Wed Jun 29 2005 - 11:22:04 CDT)
- Re: AMBER: Re: TI tutorial David A. Case (Wed Jun 29 2005 - 12:01:23 CDT)
- Re: AMBER: Re: TI tutorial Jiten (Wed Jun 29 2005 - 12:24:19 CDT)
- Re: AMBER: TI-FEP for VAL --> ALA Jiten (Sat Jun 25 2005 - 11:13:44 CDT)
- Re: AMBER: TI-FEP for ALA --> GLY Ilyas Yildirim (Sat Jun 25 2005 - 01:48:36 CDT)
- AMBER: RED question Kara Di Giorgio (Sat Jun 25 2005 - 17:44:23 CDT)
- AMBER: MM_PBSA ! Pradipta Bandyopadhyay (Sun Jun 26 2005 - 07:43:18 CDT)
- AMBER: Hbond analysis xueping (Sun Jun 26 2005 - 20:27:48 CDT)
- AMBER: mm_pbsa script ! Pradipta Bandyopadhyay (Mon Jun 27 2005 - 01:43:53 CDT)
- AMBER: Request for calculating free energy using AMBER6 S.Sundar Raman (Mon Jun 27 2005 - 06:59:00 CDT)
- AMBER: parallel error Zhang Bing (Mon Jun 27 2005 - 07:36:14 CDT)
- AMBER: INTRA molecular hbonds Giulio Rastelli (Mon Jun 27 2005 - 09:09:23 CDT)
- AMBER: pb_pgb test fail acb15885_at_uprm.edu (Mon Jun 27 2005 - 13:17:48 CDT)
- AMBER: script for calculating hydrogen bond Vijay Manickam Achari (Mon Jun 27 2005 - 21:57:30 CDT)
- AMBER: questions about RNA xinhuang_at_indiana.edu (Mon Jun 27 2005 - 22:19:58 CDT)
- AMBER: calculating torsion angles Vijay Manickam Achari (Tue Jun 28 2005 - 03:59:02 CDT)
- AMBER: dielectric constant Germán Sciaini (Wed Jun 29 2005 - 06:02:24 CDT)
- AMBER: compiler error, SGI Octane Peter Gannett (Tue Jun 28 2005 - 07:54:35 CDT)
- AMBER: amber 8 leap topology file dihedral term problem Angela Liu (Tue Jun 28 2005 - 08:59:57 CDT)
- AMBER: Fw: TI tutorial --> ALA --> GLY TI calculation Jiten (Tue Jun 28 2005 - 10:02:42 CDT)
- AMBER: calculating hydrogen bonds Vijay Manickam Achari (Tue Jun 28 2005 - 21:50:36 CDT)
- AMBER: How to read unformatted restart file in PTRAJ ? JunJun Liu (Wed Jun 29 2005 - 01:20:57 CDT)
- Re: [pgannett@hsc.wvu.edu: AMBER: compiler error, SGI Octane] Roberto Gomperts (Wed Jun 29 2005 - 10:01:00 CDT)
- AMBER: error - compiling antechamber Peter Gannett (Wed Jun 29 2005 - 14:30:20 CDT)
- AMBER: Free energy calculation for protein-protein complex using MM_PBSA Zhiguo Liu (Wed Jun 29 2005 - 20:59:01 CDT)
- AMBER: acceptor and donor in hbond calculation Vijay Manickam Achari (Thu Jun 30 2005 - 00:01:58 CDT)
- AMBER: example script for hbond calculation Vijay Manickam Achari (Thu Jun 30 2005 - 01:27:15 CDT)
- AMBER: 10-12 potential and create atom type Fabien CAILLIEZ (Thu Jun 30 2005 - 12:19:41 CDT)
- AMBER: antechamber error Peter Gannett (Thu Jun 30 2005 - 14:05:25 CDT)
- AMBER: Create new Unit Douali, Latifa (Thu Jun 30 2005 - 18:45:37 CDT)
- AMBER: least square fit of snapshots in md trajectory to a reference frame Ye Mei (Thu Jun 30 2005 - 21:56:08 CDT)
- AMBER: question about spline in sander -- array size of eed_cub Cordova, Luis E. (Thu Jun 30 2005 - 23:33:25 CDT)
- AMBER: question about leaprc.gaff and xxx.top Vijay Manickam Achari (Fri Jul 01 2005 - 00:52:15 CDT)
- AMBER: how to make cluster files? Ananda Rama Krishnan Selvaraj (Fri Jul 01 2005 - 02:10:05 CDT)
- AMBER: molecular dynamics simulation of protein containing Mg2+ cation Ye Mei (Fri Jul 01 2005 - 04:33:31 CDT)
- AMBER: cavity volume Anthony Cruz (Fri Jul 01 2005 - 07:46:24 CDT)
- AMBER: Replica exchange Anthony Cruz (Fri Jul 01 2005 - 09:33:46 CDT)
- AMBER: Temperature varible in MMPBSA script JunJun Liu (Fri Jul 01 2005 - 08:59:05 CDT)
- AMBER: please help us on partial charge calculation of PT complex using RESP peng79_at_email.unc.edu (Fri Jul 01 2005 - 10:10:31 CDT)
- AMBER: questions about topology file Fabien CAILLIEZ (Fri Jul 01 2005 - 10:49:20 CDT)
- AMBER: (no subject) Varsha Goyal (Fri Jul 01 2005 - 16:46:55 CDT)
- AMBER: loading DNA-RNA hybrid in xleap cbala_at_igib.res.in (Sat Jul 02 2005 - 10:36:59 CDT)
- AMBER: Question about Lennard-Jones Parameters in Topology file Linda Prengaman (Sat Jul 02 2005 - 13:15:51 CDT)
- AMBER: MM-PBSA-big energies John (Sun Jul 03 2005 - 16:31:56 CDT)
- AMBER: estimation of interface size Ye Mei (Sun Jul 03 2005 - 21:19:55 CDT)
- AMBER: Loading a macmodel file complex Yogesh Sabnis (Mon Jul 04 2005 - 10:02:49 CDT)
- AMBER: pmemd - bug report Petr Kulhanek (Mon Jul 04 2005 - 11:33:05 CDT)
- Re: AMBER: pmemd - bug report Robert Duke (Mon Jul 04 2005 - 15:30:54 CDT)
- Re: AMBER: pmemd - bug report Robert Duke (Mon Jul 04 2005 - 16:40:18 CDT)
- Re: AMBER: pmemd - bug report Robert Duke (Mon Jul 04 2005 - 22:58:14 CDT)
- Re: AMBER: pmemd - bug report Petr Kulhanek (Tue Jul 05 2005 - 05:31:14 CDT)
- Re: AMBER: pmemd - bug report Petr Kulhanek (Tue Jul 05 2005 - 11:29:54 CDT)
- Re: AMBER: pmemd - bug report Robert Duke (Tue Jul 05 2005 - 11:47:19 CDT)
- Re: AMBER: pmemd - bug report David A. Case (Tue Jul 05 2005 - 12:43:18 CDT)
- Re: AMBER: pmemd - bug report David A. Case (Tue Jul 05 2005 - 12:38:09 CDT)
- Re: AMBER: pmemd - bug report Petr Kulhanek (Tue Jul 05 2005 - 05:31:14 CDT)
- AMBER: nucgen and nukit dthomas_at_chem.uwa.edu.au (Tue Jul 05 2005 - 09:55:44 CDT)
- Re: AMBER: nucgen and nukit Bill Ross (Tue Jul 05 2005 - 11:33:04 CDT)
- AMBER: restart file Harianto Tjong (Tue Jul 05 2005 - 13:49:20 CDT)
- AMBER: DNA strands separate ivan_at_mmb.pcb.ub.es (Wed Jul 06 2005 - 05:39:24 CDT)
- AMBER: how to average the structure along md trajectory Ye Mei (Wed Jul 06 2005 - 08:51:56 CDT)
- AMBER: AMBER on Mac OS X Varsha Goyal (Wed Jul 06 2005 - 09:55:12 CDT)
- AMBER: box size in explicit water Lwin, ThuZar (Wed Jul 06 2005 - 11:39:47 CDT)
- AMBER: sander problem Anthony Cruz (Wed Jul 06 2005 - 18:05:44 CDT)
- AMBER: problem with addIons Lwin, ThuZar (Wed Jul 06 2005 - 16:41:25 CDT)
- AMBER: question about sander minimization error drugdesign (Thu Jul 07 2005 - 03:37:51 CDT)
- Re: AMBER: Replica Exchange Carlos Simmerling (Thu Jul 07 2005 - 08:43:17 CDT)
- AMBER: tyrosyl charges Ozlem Demir (Thu Jul 07 2005 - 12:07:24 CDT)
- AMBER: Release of R.E.D-II FyD (Thu Jul 07 2005 - 12:58:54 CDT)
- AMBER: problems with bonds in sander Fabien CAILLIEZ (Thu Jul 07 2005 - 13:18:19 CDT)
- AMBER: how is truncated octahedron box calculated Lwin, ThuZar (Thu Jul 07 2005 - 15:38:05 CDT)
- AMBER: building nucleic acids mathew k varghese (Thu Jul 07 2005 - 23:07:03 CDT)
- Re: AMBER: building nucleic acids Bill Ross (Fri Jul 08 2005 - 14:05:15 CDT)
- AMBER: LCPO SASA parameters for other elements when using gbsa=1 option David.Maxwell_at_di.mdacc.tmc.edu (Fri Jul 08 2005 - 15:10:00 CDT)
- AMBER: infinite DNA Stern, Julie (Fri Jul 08 2005 - 16:44:25 CDT)
- AMBER: glc0358_at_vip.sina.com (Sat Jul 09 2005 - 01:22:45 CDT)
- AMBER: simulation with Mg2+ ions and counter ions Ye Mei (Sat Jul 09 2005 - 01:54:16 CDT)
- AMBER: glc0358_at_vip.sina.com (Sat Jul 09 2005 - 02:03:23 CDT)
- AMBER: how to see the box lines Ananda Rama Krishnan Selvaraj (Sat Jul 09 2005 - 13:10:50 CDT)
- AMBER: molecular dynamics Vijay Manickam Achari (Sat Jul 09 2005 - 21:55:55 CDT)
- AMBER: Leap compilation issues justin litchfield (Sun Jul 10 2005 - 20:41:50 CDT)
- Re: AMBER: Leap compilation issues David A. Case (Mon Jul 11 2005 - 00:13:04 CDT)
- Re: AMBER: Leap compilation issues justin litchfield (Mon Jul 11 2005 - 01:49:33 CDT)
- Re: AMBER: Leap compilation issues Andreas Svrcek-Seiler (Mon Jul 11 2005 - 05:43:39 CDT)
- AMBER: Question about "nmanal" Yen-Ting Lai (Mon Jul 11 2005 - 09:11:25 CDT)
- Re: AMBER: Question about "nmanal" David A. Case (Mon Jul 11 2005 - 11:15:32 CDT)
- Re: AMBER: Question about "nmanal" Yen-Ting Lai (Tue Jul 12 2005 - 05:09:24 CDT)
- Re: AMBER: Question about "nmanal" Yen-Ting Lai (Tue Jul 12 2005 - 08:36:25 CDT)
- Re: AMBER: Question about "nmanal" David A. Case (Tue Jul 12 2005 - 11:29:46 CDT)
- Re: AMBER: Leap compilation issues Bill Ross (Mon Jul 11 2005 - 20:34:35 CDT)
- Re: AMBER: Leap compilation issues David A. Case (Mon Jul 11 2005 - 00:13:04 CDT)
- Re: AMBER: Leap compilation issues Bill Ross (Sun Jul 10 2005 - 21:11:43 CDT)
- AMBER: Critical PMEMD 8 Bugfix Robert Duke (Mon Jul 11 2005 - 07:38:59 CDT)
- AMBER: MM_PBSA help, please opitz_at_che.udel.edu (Mon Jul 11 2005 - 10:55:47 CDT)
- Re: AMBER: MM_PBSA help, please Scott Pendley (Mon Jul 11 2005 - 13:30:34 CDT)
- Re: AMBER: MM_PBSA help, please opitz_at_che.udel.edu (Mon Jul 11 2005 - 16:15:19 CDT)
- Re: AMBER: MM_PBSA help, please opitz_at_che.udel.edu (Tue Jul 12 2005 - 09:19:05 CDT)
- Re: AMBER: MM_PBSA help, please opitz_at_che.udel.edu (Tue Jul 12 2005 - 12:29:19 CDT)
- Re: AMBER: MM_PBSA help, please opitz_at_che.udel.edu (Tue Jul 12 2005 - 17:18:50 CDT)
- AMBER: Ptraj and order of operations Furse, Kristina Elisabet (Mon Jul 11 2005 - 19:26:09 CDT)
- Re: AMBER: Ptraj and order of operations Scott Pendley (Tue Jul 12 2005 - 18:22:29 CDT)
- Re: AMBER: Ptraj and order of operations Furse, Kristina Elisabet (Tue Jul 12 2005 - 20:07:04 CDT)
- Re: AMBER: Ptraj and order of operations Furse, Kristina Elisabet (Wed Jul 13 2005 - 13:55:02 CDT)
- AMBER: pdb files from traj file YoungJin Cho (Wed Jul 13 2005 - 16:06:30 CDT)
- Re: AMBER: pdb files from traj file Carlos Simmerling (Wed Jul 13 2005 - 16:16:52 CDT)
- RE: AMBER: pdb files from traj file Rhoad, Jonathan S. (Wed Jul 13 2005 - 16:22:56 CDT)
- Re: AMBER: pdb files from traj file David LeBard (Wed Jul 13 2005 - 16:30:07 CDT)
- RE: AMBER: pdb files from traj file Ross Walker (Wed Jul 13 2005 - 16:37:05 CDT)
- AMBER: pdb files from traj file YoungJin Cho (Wed Jul 13 2005 - 16:06:30 CDT)
- AMBER: MD simulation on a protein solvated by a combination of some water models ? B $BIp;V (Mon Jul 11 2005 - 23:10:12 CDT)
- AMBER: doubt on the value of Pressure on MD run Ananda Rama Krishnan Selvaraj (Tue Jul 12 2005 - 03:21:07 CDT)
- AMBER: Anal - problems with energy analysis Yogesh Sabnis (Tue Jul 12 2005 - 03:33:30 CDT)
- AMBER: TI - frcmod file Oliver Hucke (Tue Jul 12 2005 - 14:21:44 CDT)
- Re: AMBER: TI - frcmod file Ilyas Yildirim (Tue Jul 12 2005 - 17:06:53 CDT)
- Re: AMBER: TI - frcmod file Oliver Hucke (Tue Jul 12 2005 - 18:54:11 CDT)
- Re: AMBER: TI - frcmod file Ilyas Yildirim (Wed Jul 13 2005 - 15:42:49 CDT)
- Re: AMBER: TI - frcmod file David A. Case (Wed Jul 13 2005 - 16:10:56 CDT)
- Re: AMBER: TI - frcmod file Ilyas Yildirim (Wed Jul 13 2005 - 16:32:41 CDT)
- Re: AMBER: TI - frcmod file Oliver Hucke (Wed Jul 13 2005 - 16:18:08 CDT)
- Re: AMBER: TI - frcmod file Oliver Hucke (Tue Jul 12 2005 - 18:54:11 CDT)
- FW: AMBER: TI - frcmod file Douali, Latifa (Wed Jul 13 2005 - 10:38:25 CDT)
- RE: AMBER: TI - frcmod file Rhoad, Jonathan S. (Wed Jul 13 2005 - 16:03:17 CDT)
- Re: AMBER: TI - frcmod file Ilyas Yildirim (Tue Jul 12 2005 - 17:06:53 CDT)
- AMBER: question replica exchange acceptance ratio Zhuang (Tue Jul 12 2005 - 16:01:19 CDT)
- AMBER: Comparison of AMBER against DL-POLY Devashish Kumar (Tue Jul 12 2005 - 17:32:03 CDT)
- AMBER: Amber 8: create topology for solvent - PBC box size problem Angela Liu (Wed Jul 13 2005 - 13:41:04 CDT)
- AMBER: Amber 8: heterogeneous multiple copy LES method Angela Liu (Wed Jul 13 2005 - 13:47:08 CDT)
- AMBER: lib file for nonstandard residue Eric Hu (Wed Jul 13 2005 - 18:52:19 CDT)
- AMBER: units of mwcovar matrix befor conversion Kateryna Miroshnychenko (Thu Jul 14 2005 - 03:18:28 CDT)
- Re:AMBER: MD simulation on a protein solvated by a combination of some water mod B $BIp;V (Thu Jul 14 2005 - 04:56:39 CDT)
- AMBER: Modeling of a radical L Jin (Thu Jul 14 2005 - 05:46:20 CDT)
- AMBER: Leap question Kara Di Giorgio (Thu Jul 14 2005 - 10:10:12 CDT)
- Re: AMBER: lib file for nonstandard residue Bill Ross (Thu Jul 14 2005 - 14:08:03 CDT)
- AMBER: Leap problem Kara Di Giorgio (Thu Jul 14 2005 - 19:06:50 CDT)
- AMBER: Can GB and MS work correctly together in mmpbsa? zhli_2000_at_126.com (Thu Jul 14 2005 - 21:38:08 CDT)
- Re: AMBER: Can GB and MS work correctly together in mmpbsa? Holger Gohlke (Fri Jul 15 2005 - 00:39:21 CDT)
- Re: AMBER: Can GB and MS work correctly together in mmpbsa? zhli_2000_at_126.com (Fri Jul 15 2005 - 02:10:41 CDT)
- Re: AMBER: Can GB and MS work correctly together in mmpbsa? Scott Pendley (Fri Jul 15 2005 - 12:46:46 CDT)
- Re: AMBER: Can GB and MS work correctly together in mmpbsa? Scott Pendley (Fri Jul 15 2005 - 15:08:43 CDT)
- Re: AMBER: Can GB and MS work correctly together in mmpbsa? zhli_2000_at_126.com (Sat Jul 16 2005 - 22:30:47 CDT)
- Re: AMBER: Can GB and MS work correctly together in mmpbsa? Scott Pendley (Mon Jul 18 2005 - 12:31:29 CDT)
- Re: AMBER: Can GB and MS work correctly together in mmpbsa? Alfonso Garcia-Sosa (Mon Jul 18 2005 - 14:16:21 CDT)
- AMBER: Re: (ČđĐÇĚáĘž-´ËÓĘźţżÉÄÜĘÇŔŹťřÓĘźţ)Re: AMBER: Can GB and MS work correctly together in mmpbsa? zhli_2000_at_126.com (Mon Jul 18 2005 - 20:09:23 CDT)
- AMBER: Re: (ČđĐÇĚáĘž-´ËÓĘźţżÉÄÜĘÇŔŹťřÓĘźţ)Re: AMBER: Can GB and MS work correctly together in mmpbsa? zhli_2000_at_126.com (Mon Jul 18 2005 - 20:23:39 CDT)
- Re: AMBER: Can GB and MS work correctly together in mmpbsa? zhli_2000_at_126.com (Fri Jul 15 2005 - 02:10:41 CDT)
- Re: AMBER: Can GB and MS work correctly together in mmpbsa? Holger Gohlke (Fri Jul 15 2005 - 00:39:21 CDT)
- AMBER: Energy decomposition parameters Angelo Pugliese (Fri Jul 15 2005 - 03:57:21 CDT)
- AMBER: P4 EM64T Intel Fortran Compile Problem Dawei Zhang (Fri Jul 15 2005 - 12:04:49 CDT)
- AMBER: Re: Problems with ptraj/rdparm Thomas E. Cheatham, III (Fri Jul 15 2005 - 14:22:28 CDT)
- AMBER: problem with protein ligand complex Claire Zerafa (Sat Jul 16 2005 - 11:31:56 CDT)
- AMBER: random-coil polymer Varsha Goyal (Sat Jul 16 2005 - 17:35:19 CDT)
- AMBER: AMBER-process_mdout.perl Praveena Gopal (Mon Jul 18 2005 - 02:26:19 CDT)
- AMBER: PMF calculations with TI using the sander Vitor Manuel Sousa F?x (Mon Jul 18 2005 - 02:30:59 CDT)
- AMBER: cap simulations questions Fabien CAILLIEZ (Mon Jul 18 2005 - 09:50:32 CDT)
- AMBER: segmentation fault in radial ptraj Kateryna Miroshnychenko (Mon Jul 18 2005 - 11:55:08 CDT)
- AMBER: Using Antechamber with Gamess and other molecular manipulations Charles Karney (Mon Jul 18 2005 - 12:28:20 CDT)
- AMBER: comparing md trajectories ayongye_at_chem.uga.edu (Mon Jul 18 2005 - 20:12:15 CDT)
- AMBER: pdb file and xleap Wai Keat Yam (Tue Jul 19 2005 - 05:06:50 CDT)
- AMBER: mm_pbsa question Matthew Davies (Tue Jul 19 2005 - 05:07:51 CDT)
- AMBER: Amber 7 Compiler Error Stephen P. Molnar, Ph.D. (Tue Jul 19 2005 - 07:26:14 CDT)
- AMBER: Compiling Amber7 wint Intel Fortran v8 Compiler Stephen P. Molnar, Ph.D. (Tue Jul 19 2005 - 15:14:30 CDT)
- AMBER: Trouble with Amber8 Dustin (Tue Jul 19 2005 - 15:16:10 CDT)
- AMBER: cap and ptraj Fabien CAILLIEZ (Tue Jul 19 2005 - 17:14:50 CDT)
- AMBER: FW: Andrew Box (Tue Jul 19 2005 - 21:07:44 CDT)
- AMBER: P4 EM64T Intel Fortran Compile Problem Zhang Bing (Wed Jul 20 2005 - 21:24:20 CDT)
- AMBER: Atom type :Si Ananda Rama Krishnan Selvaraj (Thu Jul 21 2005 - 14:02:23 CDT)
- AMBER: [OT] A nab programming question M. L. Dodson (Thu Jul 21 2005 - 15:07:09 CDT)
- AMBER: Question about Prep file opitz_at_che.udel.edu (Thu Jul 21 2005 - 15:52:41 CDT)
- AMBER: Error in MD mathew k varghese (Thu Jul 21 2005 - 22:53:08 CDT)
- AMBER: Lipid bilayer parameters nag raj (Fri Jul 22 2005 - 02:18:24 CDT)
- AMBER: An atom name with 4 characters is not compatible with Leap ? Arnoult, Eric [PRDFR] (Fri Jul 22 2005 - 02:53:24 CDT)
- Re: AMBER: An atom name with 4 characters is not compatible with Leap ? ivan_at_mmb.pcb.ub.es (Fri Jul 22 2005 - 03:16:52 CDT)
- Re: AMBER: An atom name with 4 characters is not compatible with Leap ? Tim Meyer (Fri Jul 22 2005 - 10:06:52 CDT)
- Re: AMBER: An atom name with 4 characters is not compatible with Leap ? David A. Case (Fri Jul 22 2005 - 12:24:58 CDT)
- AMBER: SHAKE error Agata Jurkiewicz (Fri Jul 22 2005 - 09:09:34 CDT)
- Re: AMBER: SHAKE error Carlos Simmerling (Fri Jul 22 2005 - 09:56:53 CDT)
- Re: AMBER: SHAKE error David A. Case (Fri Jul 22 2005 - 11:04:15 CDT)
- Re: AMBER: SHAKE error Agata Jurkiewicz (Fri Jul 22 2005 - 12:01:16 CDT)
- Re: AMBER: SHAKE error Carlos Simmerling (Fri Jul 22 2005 - 12:24:46 CDT)
- Re: AMBER: SHAKE error Agata Jurkiewicz (Fri Jul 22 2005 - 14:12:10 CDT)
- Re: AMBER: SHAKE error Ilyas Yildirim (Fri Jul 22 2005 - 14:23:06 CDT)
- Re: AMBER: SHAKE error Carlos Simmerling (Fri Jul 22 2005 - 14:26:36 CDT)
- Re: AMBER: SHAKE error David A. Case (Fri Jul 22 2005 - 15:46:42 CDT)
- Re: AMBER: SHAKE error Agata Jurkiewicz (Fri Jul 22 2005 - 17:06:49 CDT)
- Re: AMBER: SHAKE error David A. Case (Mon Jul 25 2005 - 18:57:02 CDT)
- Re: AMBER: SHAKE error Agata Jurkiewicz (Fri Jul 22 2005 - 12:01:16 CDT)
- AMBER: nucgen bdna types Stern, Julie (Fri Jul 22 2005 - 20:01:20 CDT)
- AMBER: mmpbsa test problem Suxin Zheng (Fri Jul 22 2005 - 20:41:11 CDT)
- AMBER: Lipid bilayer parameters and charmm force field parameters nag raj (Fri Jul 22 2005 - 22:15:35 CDT)
- Re: AMBER: Modeling of a radical Peter Gannett (Sat Jul 23 2005 - 09:21:25 CDT)
- AMBER: Adding residues to a DNA sequence Kara Di Giorgio (Sun Jul 24 2005 - 20:50:45 CDT)
- AMBER: fit Yong Xu (Mon Jul 25 2005 - 04:04:57 CDT)
- AMBER: ptraj-acceptor mask format Peter Gannett (Mon Jul 25 2005 - 14:10:47 CDT)
- AMBER: antechamber Dustin (Mon Jul 25 2005 - 15:30:40 CDT)
- AMBER: nucgen H5T H3T Stern, Julie (Mon Jul 25 2005 - 20:55:52 CDT)
- AMBER: potential of mean force calculation along reaction coordinates Ye Mei (Tue Jul 26 2005 - 02:04:00 CDT)
- AMBER: Lipid parameters nag raj (Tue Jul 26 2005 - 05:55:22 CDT)
- AMBER: Periodic box imaging using ptraj Grzegorz Jezierski (Tue Jul 26 2005 - 08:25:53 CDT)
- AMBER: why not minimize snapshots before MM/PBSA calculations JunJun Liu (Tue Jul 26 2005 - 10:02:00 CDT)
- RE: AMBER: Tutoial 8 (Case Study) Ross Walker (Tue Jul 26 2005 - 12:03:37 CDT)
- AMBER: Thermodynamic Integration for conformational changes? Grzegorz Jezierski (Tue Jul 26 2005 - 12:33:00 CDT)
- Re: AMBER: Thermodynamic Integration for conformational changes? Carlos Simmerling (Tue Jul 26 2005 - 13:02:57 CDT)
- Re: AMBER: Thermodynamic Integration for conformational changes? David A. Case (Tue Jul 26 2005 - 13:42:54 CDT)
- AMBER: Format of atom specifiication after FIND Joseph Nachman (Tue Aug 16 2005 - 14:02:55 CDT)
- AMBER: new residue Douali, Latifa (Tue Jul 26 2005 - 19:50:51 CDT)
- RE: AMBER: An atom name with 4 characters is not compatible with Leap ? Arnoult, Eric [PRDFR] (Wed Jul 27 2005 - 02:20:27 CDT)
- AMBER: cutoff in ANAL Madjid Taghdir (Wed Jul 27 2005 - 03:06:54 CDT)
- AMBER: prepi format and question about it Ilyas Yildirim (Wed Jul 27 2005 - 04:20:00 CDT)
- AMBER: Protein residue numbering Sukjoon Yoon (Wed Jul 27 2005 - 06:52:42 CDT)
- AMBER: [FWD] water minimalization problems blakrose_at_gazeta.pl (Wed Jul 27 2005 - 10:46:47 CDT)
- AMBER: How to insert a protein in lipid bilayer nag raj (Wed Jul 27 2005 - 11:56:07 CDT)
- AMBER: pbsa problem Suxin Zheng (Wed Jul 27 2005 - 14:47:29 CDT)
- AMBER: convert_trajectory Wei Chen (Wed Jul 27 2005 - 15:58:36 CDT)
- AMBER: Minimized structure Yam (Wed Jul 27 2005 - 22:02:03 CDT)
- Re: AMBER: Minimized structure Thomas E. Cheatham, III (Wed Jul 27 2005 - 22:47:28 CDT)
- Re: AMBER: Minimized structure Yam (Thu Jul 28 2005 - 21:25:29 CDT)
- Re: AMBER: Minimized structure Thomas E. Cheatham, III (Thu Jul 28 2005 - 22:09:55 CDT)
- Re: AMBER: Minimized structure Yam (Thu Jul 28 2005 - 23:03:40 CDT)
- RE: Re: AMBER: Minimized structure Linchen Gong (Thu Jul 28 2005 - 01:55:05 CDT)
- Re: AMBER: Minimized structure Carlos Simmerling (Thu Jul 28 2005 - 05:53:45 CDT)
- Re: AMBER: Minimized structure Vitor Manuel Sousa F?x (Thu Jul 28 2005 - 06:07:09 CDT)
- Re: AMBER: Minimized structure Yam (Thu Jul 28 2005 - 21:25:29 CDT)
- Re: AMBER: Minimized structure Thomas E. Cheatham, III (Wed Jul 27 2005 - 22:47:28 CDT)
- AMBER: nucgen error (U not generated) mathew k varghese (Wed Jul 27 2005 - 22:28:51 CDT)
- AMBER: dihedral term in prmtop file Ye Mei (Thu Jul 28 2005 - 09:38:55 CDT)
- AMBER: Division by zero in sander Caleb S Howe (cshowe_at_Princeton.EDU) (Thu Jul 28 2005 - 09:57:00 CDT)
- AMBER: Fatal Error on loading a pdb in xLeap Kara Di Giorgio (Thu Jul 28 2005 - 10:10:45 CDT)
- AMBER: ambpdb core dump Peter Gannett (Fri Jul 29 2005 - 06:27:46 CDT)
- AMBER: ptraj output missing opitz_at_che.udel.edu (Fri Jul 29 2005 - 10:05:19 CDT)
- AMBER: temperature keep increasing in high temp. Hwankyu Lee (Fri Jul 29 2005 - 16:27:04 CDT)
- AMBER: mm_pbsa Wei Chen (Fri Jul 29 2005 - 19:10:46 CDT)
- AMBER: Failed sander runs for large systems Pratul K. Agarwal (Fri Jul 29 2005 - 21:41:44 CDT)
- AMBER: RESTARTED DUE TO LINMIN FAILURE Sukjoon Yoon (Sat Jul 30 2005 - 01:00:24 CDT)
- AMBER: Amber parameters for ADP zgleo (Sat Jul 30 2005 - 00:22:19 CDT)
- AMBER: questions about MG ions JIANING WANG (Sun Jul 31 2005 - 18:12:36 CDT)
- AMBER: AMBER8 crashes machine(nodes) under IBM compiler, Suse Linux, amd IBM loadleveler Soo (Sun Jul 31 2005 - 21:45:01 CDT)
- AMBER: coordinated water molecules deleted when addions Ye Mei (Mon Aug 01 2005 - 04:20:11 CDT)
- AMBER: ptraj help, how to enable disabled ptraj routine? opitz_at_che.udel.edu (Mon Aug 01 2005 - 10:19:20 CDT)
- AMBER: antechamber problem using RESP luckyang_at_gmail.com (Mon Aug 01 2005 - 20:29:26 CDT)
- AMBER: AMBER8 limitation of memory in QM/MM calculation nadtanet nunthaboot (Mon Aug 01 2005 - 21:21:59 CDT)
- AMBER: strange minimalization output blakrose_at_gazeta.pl (Tue Aug 02 2005 - 09:56:38 CDT)
- AMBER: Leap set head/tail question Kara Di Giorgio (Tue Aug 02 2005 - 13:01:08 CDT)
- AMBER: Boron and Amber Kara Di Giorgio (Tue Aug 02 2005 - 15:18:46 CDT)
- AMBER: bond breaking/ energetic ion vannajan_at_chiangmai.ac.th (Tue Aug 02 2005 - 21:11:16 CDT)
- AMBER: power supply crash==>boot problems Kristof Stevens (Wed Aug 03 2005 - 03:20:08 CDT)
- AMBER: bond parameters Gustavo Pierdominici Sottile (Wed Aug 03 2005 - 09:39:34 CDT)
- AMBER: installing amber7 on 64bit cluster MURAT CETINKAYA (Wed Aug 03 2005 - 10:46:20 CDT)
- Re: AMBER: bond breaking/ energetic ion Bill Ross (Wed Aug 03 2005 - 12:41:36 CDT)
- AMBER: Strange difference in speed between Altix (Itanium2) and Tezro (MIPS) SGI for small GB/SA run David.Maxwell_at_di.mdacc.tmc.edu (Wed Aug 03 2005 - 12:39:43 CDT)
- AMBER: Error with antechamber Joseph Fernandez (Wed Aug 03 2005 - 14:45:29 CDT)
- AMBER: a trivial question Linchen Gong (Thu Aug 04 2005 - 04:14:04 CDT)
- AMBER: nmode Wei Chen (Thu Aug 04 2005 - 13:04:17 CDT)
- AMBER: Incorrect imaging when using Periodic Boundary Conditions in NAMD with AMBER parameters Grzegorz Jezierski (Thu Aug 04 2005 - 13:24:42 CDT)
- AMBER: about salt bridges xueping (Fri Aug 05 2005 - 01:34:18 CDT)
- AMBER: Conformational energy (QM) for parameterization yuann (Fri Aug 05 2005 - 05:09:14 CDT)
- AMBER: leap question Kara Di Giorgio (Fri Aug 05 2005 - 11:38:47 CDT)
- AMBER: NMR refinement Lei Jia (Fri Aug 05 2005 - 14:50:29 CDT)
- AMBER: Convert .prmtop (AMBER7/8) to old format (AMBER6) Hwankyu Lee (Fri Aug 05 2005 - 22:44:07 CDT)
- AMBER: is calculated B-factors always smaller than experimental ones? haixiao jin (Sun Aug 07 2005 - 09:57:54 CDT)
- AMBER: How to calculate hydrogen bond involved with water molecules quickly? haixiao jin (Mon Aug 08 2005 - 00:07:48 CDT)
- AMBER: Zymeworks job posting John Vieceli (Mon Aug 08 2005 - 12:11:42 CDT)
- AMBER: RE: is calculated B-factors always smaller than experimental ones? Yong Duan (Mon Aug 08 2005 - 13:24:26 CDT)
- AMBER: Tutorial question and some more... blakrose_at_gazeta.pl (Tue Aug 09 2005 - 01:49:45 CDT)
- Re: AMBER: Tutorial question and some more... Bill Ross (Tue Aug 09 2005 - 13:30:46 CDT)
- AMBER: The crystallographic waters should be retained or deleted? haixiao jin (Wed Aug 10 2005 - 07:35:34 CDT)
- AMBER: Creating protonated cytidine residue Peter Cornish (Wed Aug 10 2005 - 09:57:17 CDT)
- AMBER: replica exchange Anthony Cruz (Wed Aug 10 2005 - 13:13:41 CDT)
- AMBER: ptraj command inputs opitz_at_che.udel.edu (Wed Aug 10 2005 - 17:29:34 CDT)
- AMBER: group-based cutoff John Vieceli (Wed Aug 10 2005 - 19:44:56 CDT)
- AMBER: solvent problem blakrose_at_gazeta.pl (Thu Aug 11 2005 - 02:14:17 CDT)
- AMBER: Atom type problem nag raj (Thu Aug 11 2005 - 09:18:31 CDT)
- AMBER: molsurf: problem with calculate surface area Magne Olufsen (Fri Aug 12 2005 - 03:06:45 CDT)
- AMBER: How is the origin of the grid defined?(PBSA question) JunJun Liu (Sun Aug 14 2005 - 11:35:46 CDT)
- Purchased a New Home Anderson Bond (Mon Aug 15 2005 - 00:52:56 CDT)
- AMBER: wtmol and resp Guanglei Cui (Mon Aug 15 2005 - 09:59:42 CDT)
- AMBER: difference of energy in sander and nmode in amber 7 sebnem (Mon Aug 15 2005 - 16:55:24 CDT)
- AMBER: AMBER on g5 10.4 w/g95 or gfortran Rachel Burdge (Tue Aug 16 2005 - 10:12:40 CDT)
- AMBER: min problem Gustavo Pierdominici Sottile (Tue Aug 16 2005 - 18:05:56 CDT)
- AMBER: Solution for those who have mpich problem while building the parallel version of AMBER 8 Ilyas Yildirim (Tue Aug 16 2005 - 20:40:11 CDT)
- AMBER: QM/MM jojartb_at_pharm.u-szeged.hu (Wed Aug 17 2005 - 06:42:06 CDT)
- AMBER: glycan Wei Chen (Wed Aug 17 2005 - 13:25:27 CDT)
- AMBER: residence time of electrons/holes in DNA ioana_at_pegasus.arc.nasa.gov (Wed Aug 17 2005 - 16:48:43 CDT)
- AMBER: Energy Comparisons Kara Di Giorgio (Wed Aug 17 2005 - 17:00:44 CDT)
- AMBER: Amber 8: all_nucleic94.lib nucleotide geometry Angela Liu (Wed Aug 17 2005 - 17:42:03 CDT)
- Re: AMBER: Amber 8: all_nucleic94.lib nucleotide geometry Bill Ross (Wed Aug 17 2005 - 18:04:49 CDT)
- AMBER: ew_bspline.h error khn _ (Wed Aug 17 2005 - 22:33:08 CDT)
- AMBER: mm_pbsa amit_at_mbu.iisc.ernet.in (Thu Aug 18 2005 - 16:04:40 CDT)
- AMBER: parm99.dat non-bonded parameters Angela Liu (Thu Aug 18 2005 - 17:00:45 CDT)
- AMBER: parallel amber8 with mpi through qsnet Ye Mei (Thu Aug 18 2005 - 21:11:55 CDT)
- AMBER: How to construct a lipid bilayer nag raj (Fri Aug 19 2005 - 00:01:06 CDT)
- AMBER: ptraj correlation facility Simon Whitehead (Fri Aug 19 2005 - 04:15:41 CDT)
- AMBER: amber8installation cbala_at_igib.res.in (Fri Aug 19 2005 - 07:53:03 CDT)
- AMBER: shake Gustavo Pierdominici Sottile (Fri Aug 19 2005 - 11:37:46 CDT)
- AMBER: structures extracted from mmpbsa Lwin, ThuZar (Fri Aug 19 2005 - 18:25:44 CDT)
- AMBER: minimization stuck problem blakrose_at_gazeta.pl (Sat Aug 20 2005 - 06:46:07 CDT)
- AMBER: minimization stuck problem blakrose_at_gazeta.pl (Sat Aug 20 2005 - 07:32:31 CDT)
- AMBER: AMBER topology file format santanu chatterjee (Mon Aug 22 2005 - 04:18:18 CDT)
- AMBER: Restraints kanon gemini (Mon Aug 22 2005 - 05:58:25 CDT)
- Re: AMBER: Restraints Carlos Simmerling (Mon Aug 22 2005 - 07:12:26 CDT)
- AMBER: minimization stuck problem blakrose_at_gazeta.pl (Mon Aug 22 2005 - 10:17:29 CDT)
- AMBER: How to deal with the problem that a molecule go out the virtual box in vaccum Li Su (Tue Aug 23 2005 - 12:37:38 CDT)
- Bank of the West Alert online-banking-rep4958_at_bankofthewest.com (Wed Aug 24 2005 - 03:27:44 CDT)
- AMBER: mm_pbsa energy decomposition error amit_at_mbu.iisc.ernet.in (Wed Aug 24 2005 - 07:06:34 CDT)
- AMBER: essential dynamics Anthony Cruz (Wed Aug 24 2005 - 12:50:03 CDT)
- AMBER: Replica exchange Anthony Cruz (Wed Aug 24 2005 - 12:57:42 CDT)
- AMBER: a problem encountered when trying to equalibrate alanine dipeptide in explicit water Li Su (Wed Aug 24 2005 - 12:36:06 CDT)
- AMBER: ptraj efficiency justin litchfield (Wed Aug 24 2005 - 13:13:03 CDT)
- AMBER: RED II and Gaussian Raviprasad Aduri (Wed Aug 24 2005 - 21:01:46 CDT)
- AMBER: Antechamber error "Cannot successfully assign bond type for this molecule" Whitney Allen (Thu Aug 25 2005 - 11:13:11 CDT)
- AMBER: PLease remove my post rpaduri_at_chem.wayne.edu (Thu Aug 25 2005 - 11:08:38 CDT)
- AMBER: Add constraints over time Andrew Box (Fri Aug 26 2005 - 00:51:49 CDT)
- AMBER: minimization blakrose_at_gazeta.pl (Fri Aug 26 2005 - 07:20:25 CDT)
- AMBER: replica exchange Anthony Cruz (Fri Aug 26 2005 - 11:53:48 CDT)
- Re: AMBER: replica exchange Carlos Simmerling (Fri Aug 26 2005 - 10:16:51 CDT)
- AMBER: compilation problem (Mac OS X.4) Mark H. Schofield (Fri Aug 26 2005 - 11:07:05 CDT)
- Re: AMBER: Replica exchange Carlos Simmerling (Sun Aug 28 2005 - 08:16:46 CDT)
- AMBER: can I setup a simulation with restrain the COM of a group to a reference structure? bzlu_at_ucsd.edu (Sun Aug 28 2005 - 15:32:33 CDT)
- AMBER: Temperature equilibration Anthony Cruz (Mon Aug 29 2005 - 07:44:04 CDT)
- AMBER: params for cofactors Michael Dolan (Mon Aug 29 2005 - 14:54:41 CDT)
- AMBER: floating point exception anwar_at_cdfd.org.in (Mon Aug 29 2005 - 23:00:31 CDT)
- AMBER: anwar_at_cdfd.org.in (Mon Aug 29 2005 - 22:59:49 CDT)
- AMBER: in vacuo? Yam (Tue Aug 30 2005 - 04:53:07 CDT)
- AMBER: nmode minimization and normal mode calculation Bing Xiong (Tue Aug 30 2005 - 08:53:11 CDT)
- AMBER: Temperature regulation Monica Civera (Tue Aug 30 2005 - 09:43:26 CDT)
- AMBER: Lennard-Jones coeff... Pavan G (Tue Aug 30 2005 - 15:26:49 CDT)
- AMBER: Re:Antechamber Raviprasad Aduri (Tue Aug 30 2005 - 18:34:33 CDT)
- AMBER: disulfide bonds by "bond" or "edit -> draw" ? Benjamin Juhl (Wed Aug 31 2005 - 11:23:45 CDT)
- Re: AMBER: disulfide bonds by "bond" or "edit -> draw" ? Bill Ross (Wed Aug 31 2005 - 11:57:23 CDT)
- AMBER: Interpreting Amber8 Benchmark Results Nikhil Kelshikar \(nkelshik\) (Wed Aug 31 2005 - 12:07:24 CDT)
- AMBER: Why are some of the Lennard-Jones coeffs 0 ? Pavan G (Wed Aug 31 2005 - 12:18:28 CDT)
- AMBER: addles question Kevin Murphy (Wed Aug 31 2005 - 16:46:00 CDT)
- AMBER: Opinion needed-Solvents chaiann ng (Wed Aug 31 2005 - 20:59:00 CDT)
- AMBER: ptraj problem Zhang Bing (Thu Sep 01 2005 - 02:01:20 CDT)
- AMBER: H-bond energy Sebastian Fernandez Alberti (Thu Sep 01 2005 - 08:16:14 CDT)
- AMBER: Tyrosine CZ Parameterization Bug continues in Amber 8 Chris Moth (Thu Sep 01 2005 - 17:04:21 CDT)
- AMBER: Error in MD run! Ananda Rama Krishnan Selvaraj (Fri Sep 02 2005 - 05:42:54 CDT)
- AMBER: Equilibration MD mathew k varghese (Sat Sep 03 2005 - 00:55:22 CDT)
- AMBER: fixing protein for minimisation of solvent Simon Whitehead (Sat Sep 03 2005 - 05:56:55 CDT)
- Re: AMBER: fixing protein for minimisation of solvent Bill Ross (Sat Sep 03 2005 - 11:49:18 CDT)
- Re: AMBER: Equilibration MD Bill Ross (Sat Sep 03 2005 - 11:53:17 CDT)
- AMBER: STARTING WHERE I LEFT OFF Claire Zerafa (Sat Sep 03 2005 - 12:13:59 CDT)
- Re: AMBER: STARTING WHERE I LEFT OFF Bill Ross (Sat Sep 03 2005 - 12:36:23 CDT)
- Important Information About Your Sky Bank Account support_at_skyfi.com (Mon Sep 05 2005 - 11:32:11 CDT)
- AMBER: MM-PBSA error MURAT CETINKAYA (Mon Sep 05 2005 - 11:00:13 CDT)
- AMBER: RED and Multi-Orientation Raviprasad Aduri (Mon Sep 05 2005 - 21:34:56 CDT)
- AMBER: How to get PDB structures optimized for RED-II Cenk Andac (Tue Sep 06 2005 - 03:49:13 CDT)
- Re: AMBER: How to get PDB structures optimized for RED-II FyD (Tue Sep 06 2005 - 04:36:51 CDT)
- Re: AMBER: How to get PDB structures optimized for RED-II FyD (Wed Sep 07 2005 - 07:40:25 CDT)
- AMBER: masks in ptraj - Hbond analysis Fabien Cailliez (Tue Sep 06 2005 - 06:38:11 CDT)
- AMBER: generation of conformations for multi-conf. RESP fitting Kateryna Miroshnychenko (Tue Sep 06 2005 - 09:29:40 CDT)
- AMBER: AMBER antechamber; dimenion size Toshifumi Yui (Tue Sep 06 2005 - 22:22:17 CDT)
- AMBER: solvation energy Madjid Taghdir (Wed Sep 07 2005 - 05:08:31 CDT)
- AMBER: Quick question about xLeap Kara Di Giorgio (Thu Sep 08 2005 - 09:31:59 CDT)
- AMBER: Amber 8 and PATH buffer overflow Amber Correspondece (Thu Sep 08 2005 - 12:01:45 CDT)
- AMBER: Amber8 compilation error Joe Nolan (Thu Sep 08 2005 - 14:47:08 CDT)
- AMBER: Equillibration run mathew k varghese (Fri Sep 09 2005 - 01:40:08 CDT)
- AMBER: mm_pbsa example number 3 Thomas Whitington (Fri Sep 09 2005 - 03:14:19 CDT)
- AMBER: leap segmentation fault-bugfix1 didn't work Kateryna Miroshnychenko (Fri Sep 09 2005 - 08:28:43 CDT)
- AMBER: amber compilation on SGI ALTIX 350 (TEST FAILD) Anthony Cruz (Fri Sep 09 2005 - 14:19:12 CDT)
- AMBER: parralel test Anthony Cruz (Fri Sep 09 2005 - 15:41:44 CDT)
- AMBER: AMBBER: ptraj question Douali, Latifa (Fri Sep 09 2005 - 15:49:24 CDT)
- AMBER: Amber 8: questions about free energy perturbation Angela Liu (Sun Sep 11 2005 - 19:43:41 CDT)
- RE: AMBER: Amber 8: questions about free energy perturbation case (Mon Sep 12 2005 - 02:29:15 CDT)
- RE: AMBER: Amber 8: questions about free energy perturbation Angela Liu (Mon Sep 12 2005 - 05:37:30 CDT)
- Re: AMBER: Amber 8: questions about free energy perturbation David A. Case (Fri Sep 16 2005 - 04:00:13 CDT)
- Re: AMBER: Amber 8: questions about free energy perturbation Angela Liu (Fri Sep 16 2005 - 10:15:26 CDT)
- Re: AMBER: Amber 8: questions about free energy perturbation David Mobley (Fri Sep 23 2005 - 14:40:03 CDT)
- AMBER: How to build a crystal structure from a unit cell pdb? Chunhu Tan (Tue Sep 20 2005 - 13:55:06 CDT)
- RE: AMBER: Amber 8: questions about free energy perturbation Angela Liu (Mon Sep 12 2005 - 05:37:30 CDT)
- AMBER: umbrella sampling output question caoch_at_cherry.bio.titech.ac.jp (Mon Sep 12 2005 - 02:50:32 CDT)
- Re: AMBER: Amber 8: questions about free energy perturbation Angela Liu (Mon Sep 12 2005 - 05:40:34 CDT)
- Re: AMBER: Amber 8: questions about free energy perturbation Angela Liu (Tue Sep 13 2005 - 08:34:25 CDT)
- AMBER: How to split LES trajectory using TRAJ Xin Hu (Tue Sep 13 2005 - 10:03:20 CDT)
- Re: AMBER: How to split LES trajectory using TRAJ Carlos Simmerling (Mon Sep 19 2005 - 12:40:47 CDT)
- Re: AMBER: How to split LES trajectory using TRAJ Xin Hu (Mon Sep 19 2005 - 15:49:47 CDT)
- Re: AMBER: How to split LES trajectory using TRAJ Melinda Layten (Wed Sep 21 2005 - 15:09:29 CDT)
- AMBER: How to split LES trajectory using TRAJ Xin Hu (Thu Sep 22 2005 - 10:12:51 CDT)
- Re: AMBER: Amber 8: questions about free energy perturbation darden (Tue Sep 13 2005 - 10:13:14 CDT)
- AMBER: How does leap choose params ? ivan_at_mmb.pcb.ub.es (Wed Sep 14 2005 - 09:47:14 CDT)
- AMBER: How to split LES trajectory using TRAJ Xin Hu (Tue Sep 13 2005 - 10:03:20 CDT)
- RE: AMBER: Amber 8: questions about free energy perturbation case (Mon Sep 12 2005 - 02:29:15 CDT)
- AMBER: Fail to run parallel Anthony Cruz (Mon Sep 12 2005 - 07:52:29 CDT)
- AMBER: ibelly and free energy calculations David Mobley (Mon Sep 12 2005 - 16:36:25 CDT)
- AMBER: REM error Anthony Cruz (Mon Sep 12 2005 - 19:06:05 CDT)
- AMBER: Can I get each corresponding sanpshots' delta delta energy term from mm_pbsa Suxin Zheng (Mon Sep 12 2005 - 17:43:13 CDT)
- AMBER: improper torsion parameters Simon Whitehead (Tue Sep 13 2005 - 12:23:13 CDT)
- AMBER: about the %occupied of hydrogen bond haixiao jin (Wed Sep 14 2005 - 00:39:05 CDT)
- Re: AMBER: about the %occupied of hydrogen bond Thomas E. Cheatham, III (Fri Sep 16 2005 - 09:30:58 CDT)
- Re: AMBER: about the %occupied of hydrogen bond Carlos Simmerling (Fri Sep 16 2005 - 09:49:04 CDT)
- Re: AMBER: about the %occupied of hydrogen bond haixiao jin (Sun Sep 18 2005 - 23:44:07 CDT)
- Re: AMBER: about the %occupied of hydrogen bond Carlos Simmerling (Mon Sep 19 2005 - 08:04:14 CDT)
- Re: AMBER: about the %occupied of hydrogen bond haixiao jin (Mon Sep 19 2005 - 09:12:42 CDT)
- Re: AMBER: about the %occupied of hydrogen bond Carlos Simmerling (Mon Sep 19 2005 - 09:28:19 CDT)
- Re: AMBER: about the %occupied of hydrogen bond haixiao jin (Mon Sep 19 2005 - 10:17:31 CDT)
- Re: AMBER: about the %occupied of hydrogen bond Carlos Simmerling (Fri Sep 16 2005 - 09:49:04 CDT)
- Re: AMBER: about the %occupied of hydrogen bond Thomas E. Cheatham, III (Fri Sep 16 2005 - 09:30:58 CDT)
- AMBER: New information about AmberFFC FyD (Wed Sep 14 2005 - 05:18:36 CDT)
- AMBER: Glycam-parameters and antechamber Michele Porro (Wed Sep 14 2005 - 11:06:42 CDT)
- AMBER: Error in "restrt" output file Alexander Rubinstein (Wed Sep 14 2005 - 16:30:49 CDT)
- AMBER: strange case quch 2004 (Wed Sep 14 2005 - 16:57:28 CDT)
- AMBER: about radius of Br in MMPBSA calculation Yong Xu (Wed Sep 14 2005 - 21:36:35 CDT)
- AMBER: mm_pbsa: problems with dielec constant when using Magne Olufsen (Thu Sep 15 2005 - 06:02:35 CDT)
- AMBER: Problem with installation AMBER8 on Solaris 8 using original SUN compilers Daniel Wetzler (Thu Sep 15 2005 - 06:46:14 CDT)
- RE: AMBER: Problem with installation AMBER8 on Solaris 8 using original SUN compilers Ross Walker (Thu Sep 15 2005 - 12:05:36 CDT)
- RE: AMBER: Problem with installation AMBER8 on Solaris 8 using original SUN compilers Ross Walker (Thu Sep 15 2005 - 15:48:38 CDT)
- RE: AMBER: Problem with installation AMBER8 on Solaris 8 using original SUN compilers Ross Walker (Thu Sep 15 2005 - 19:36:49 CDT)
- AMBER: antechamber + mopac failure Nitin Bhardwaj (Thu Sep 15 2005 - 14:59:27 CDT)
- AMBER: creating a respgen file without Gaussian. Nitin Bhardwaj (Thu Sep 15 2005 - 15:08:36 CDT)
- AMBER: roar question Lishan Yao (Thu Sep 15 2005 - 20:08:37 CDT)
- AMBER: sander prob cbala_at_igib.res.in (Fri Sep 16 2005 - 03:18:42 CDT)
- AMBER: charges jojartb_at_pharm.u-szeged.hu (Fri Sep 16 2005 - 02:33:00 CDT)
- AMBER: GB refinement of CYANA structures Eugene DeRose (Fri Sep 16 2005 - 08:25:52 CDT)
- AMBER: using SALTCON for human cell cytoplasm Kenley Barrett (Sun Sep 18 2005 - 11:45:42 CDT)
- AMBER: Could not open file (Melb.mdcrd) with mode (r) Varsha Goyal (Mon Sep 19 2005 - 11:50:42 CDT)
- Re: AMBER: Could not open file (Melb.mdcrd) with mode (r) Melinda Layten (Mon Sep 19 2005 - 12:00:51 CDT)
- RE: AMBER: Could not open file (Melb.mdcrd) with mode (r) Ross Walker (Mon Sep 19 2005 - 12:17:29 CDT)
- AMBER: Xleap menu bar problems Steve Seibold (Mon Sep 19 2005 - 14:29:09 CDT)
- AMBER: building monosaccharides with glycam force field Lina Nilsson (Tue Sep 20 2005 - 11:09:41 CDT)
- AMBER: D-enantiomers M. Scott Shell (Tue Sep 20 2005 - 13:43:03 CDT)
- Re: AMBER: D-enantiomers David A. Case (Tue Sep 20 2005 - 18:07:53 CDT)
- Re: AMBER: D-enantiomers Thomas E. Cheatham, III (Tue Sep 20 2005 - 21:36:34 CDT)
- Re: AMBER: D-enantiomers FyD (Thu Sep 22 2005 - 07:15:49 CDT)
- Re: AMBER: D-enantiomers Piotr Cieplak (Thu Sep 22 2005 - 12:41:24 CDT)
- AMBER: antechamber problem bybaker_at_itsa.ucsf.edu (Tue Sep 20 2005 - 17:20:59 CDT)
- AMBER: Linear Interaction Energy Daniel Oehme (Tue Sep 20 2005 - 20:39:53 CDT)
- AMBER: Build an acetone Box gtg549i_at_mail.gatech.edu (Wed Sep 21 2005 - 02:18:49 CDT)
- AMBER: Leap compilation with pgf77 under 64bit platform Mingfeng Yang (Wed Sep 21 2005 - 16:09:39 CDT)
- AMBER: highly fluctuating reaction field energies in MM/PBSA Ulf Ryde (Thu Sep 22 2005 - 05:32:05 CDT)
- AMBER: AMBER7 xleap problem Kristof Stevens (Thu Sep 22 2005 - 06:00:54 CDT)
- AMBER: Problem finding transition state using NMODE Peter Anderson (Thu Sep 22 2005 - 07:36:00 CDT)
- AMBER: clustering julien (Thu Sep 22 2005 - 07:10:00 CDT)
- AMBER: Query: Problem during Production jpragati_at_ibab.ac.in (Thu Sep 22 2005 - 08:52:05 CDT)
- AMBER: no statistics part Zhang Bing (Thu Sep 22 2005 - 10:23:30 CDT)
- AMBER: no statistics part Zhang Bing (Thu Sep 22 2005 - 10:29:52 CDT)
- EBAY Update Information James Link (Thu Sep 22 2005 - 12:55:50 CDT)
- AMBER: atommask question Istvan Kolossvary (Fri Sep 23 2005 - 10:57:44 CDT)
- AMBER: Problem during Production jpragati_at_ibab.ac.in (Sat Sep 24 2005 - 09:04:10 CDT)
- AMBER: Unformatted restart file cannot be read by sander when PME in use (AMBER8) John D. Chodera (Sun Sep 25 2005 - 20:08:37 CDT)
- AMBER: Modified RNA Bases Raviprasad Aduri (Mon Sep 26 2005 - 21:41:12 CDT)
- AMBER: Mg2+ radius in my_parse_delphi.siz JunJun Liu (Mon Sep 26 2005 - 22:30:14 CDT)
- AMBER: (no subject) Andrew Box (Mon Sep 26 2005 - 23:40:51 CDT)
- AMBER: Trajectory Problem Anthony Cruz (Thu Sep 22 2005 - 15:24:10 CDT)
- RE: AMBER: number of processors Douali, Latifa (Wed Sep 28 2005 - 12:41:21 CDT)
- AMBER: Invalid Digit "*" Gert Kiss (Wed Sep 28 2005 - 13:18:04 CDT)
- AMBER: antechamber -- missing improper torsions David Mobley (Wed Sep 28 2005 - 17:35:25 CDT)
- AMBER: Making prep file of sugar derivative Toshifumi Yui (Thu Sep 29 2005 - 07:02:12 CDT)
- FW: AMBER: number of processors Douali, Latifa (Thu Sep 29 2005 - 15:49:29 CDT)
- AMBER: Minimization in sander and nmode Mingfeng Yang (Thu Sep 29 2005 - 18:01:24 CDT)
- AMBER: MM_PB/GBSA Zhang Bing (Thu Sep 29 2005 - 22:13:05 CDT)
- AMBER: Amber compilation on opteron with PGI compiler Mingfeng Yang (Fri Sep 30 2005 - 08:15:43 CDT)
- AMBER: Error check COM velocity!! jpragati_at_ibab.ac.in (Mon Oct 03 2005 - 06:58:01 CDT)
- AMBER: cut-offs in non-periodic simulations Fabien Cailliez (Mon Oct 03 2005 - 11:31:26 CDT)
- AMBER: question temperature coupling tautp value for RNA Zhuang (Mon Oct 03 2005 - 17:40:23 CDT)
- AMBER: question temperature coupling tautp value for RNA Zhuang (Mon Oct 03 2005 - 17:40:09 CDT)
- AMBER: Problem during production!! jpragati_at_ibab.ac.in (Tue Oct 04 2005 - 03:33:48 CDT)
- AMBER: Can I trust ANAL result? Madjid Taghdir (Tue Oct 04 2005 - 05:55:51 CDT)
- AMBER: Manganese ion parameter nadtanet (Tue Oct 04 2005 - 06:55:59 CDT)
- AMBER: Energy output problem! Pradipta Bandyopadhyay (Tue Oct 04 2005 - 07:08:04 CDT)
- AMBER: The default of HIS in leaprc : HID or HIE ? Jiten (Tue Oct 04 2005 - 11:21:52 CDT)
- AMBER: Fw: The default of HIS in leaprc : HID or HIE ? Jiten (Tue Oct 04 2005 - 11:34:54 CDT)
- AMBER: Installation error - icc: command not found Sukjoon Yoon (Tue Oct 04 2005 - 20:13:11 CDT)
- AMBER: AMBER compilation - RH Enterprise 4, Xeon EM64T Sukjoon Yoon (Wed Oct 05 2005 - 00:55:07 CDT)
- Re: AMBER: Installation error - icc: command not found Andreas Svrcek-Seiler (Wed Oct 05 2005 - 04:47:31 CDT)
- Re: AMBER: Installation error - icc: command not found Mingfeng Yang (Wed Oct 05 2005 - 09:14:16 CDT)
- AMBER: Is AMBER package suitable for simulating multiple molecule in solvent? wulei (Wed Oct 05 2005 - 04:26:00 CDT)
- AMBER: question about grid in ptraj Linchen Gong (Thu Oct 06 2005 - 08:03:00 CDT)
- AMBER: R factors in NMR intensity refinement Yuqin Cai (Thu Oct 06 2005 - 11:29:31 CDT)
- AMBER: AMBER compilation error Sukjoon Yoon (Thu Oct 06 2005 - 21:32:36 CDT)
- AMBER: QMMM question xiaoqin huang (Thu Oct 06 2005 - 23:09:53 CDT)
- AMBER: parameters for pyridoxal phosphate Anna Feldman-Salit (Fri Oct 07 2005 - 08:46:29 CDT)
- AMBER: problem with temperature weights Manish Datt (Fri Oct 07 2005 - 10:43:52 CDT)
- AMBER: sander error Yam (Sun Oct 09 2005 - 21:04:20 CDT)
- Re: AMBER: sander error Guanglei Cui (Mon Oct 10 2005 - 08:52:29 CDT)
- RE: AMBER: sander error Ross Walker (Mon Oct 10 2005 - 09:13:35 CDT)
- RE: AMBER: sander error Yam (Tue Oct 11 2005 - 04:21:08 CDT)
- Re: AMBER: sander error David A. Case (Tue Oct 11 2005 - 09:27:20 CDT)
- AMBER: sander error Yam (Mon Oct 17 2005 - 21:10:50 CDT)
- RE: AMBER: sander error Ross Walker (Tue Oct 18 2005 - 09:23:18 CDT)
- Re: AMBER: sander error Robert Duke (Tue Oct 18 2005 - 09:49:05 CDT)
- Re: AMBER: sander error David A. Case (Tue Oct 18 2005 - 09:59:39 CDT)
- Re: AMBER: sander error Robert Duke (Tue Oct 18 2005 - 10:18:05 CDT)
- RE: AMBER: sander error Yam (Tue Oct 11 2005 - 04:21:08 CDT)
- AMBER: Parameters and topology for Diacylglycerol (DAG) Nitin Bhardwaj (Mon Oct 10 2005 - 13:02:14 CDT)
- AMBER: how to constitute T-phosphotyrosine group? luaj_at_sohu.com (Tue Oct 11 2005 - 07:28:38 CDT)
- AMBER: PCA Claire Zerafa (Tue Oct 11 2005 - 08:33:49 CDT)
- AMBER: how can I constitute T-phosphotyrosine group ? luaj_at_sohu.com (Tue Oct 11 2005 - 09:25:02 CDT)
- AMBER: maxgrp error Javier Pérez Mirón (Tue Oct 11 2005 - 14:55:46 CDT)
- AMBER: warning in leap Marcela Madrid (Tue Oct 11 2005 - 16:26:42 CDT)
- AMBER: How to simulate a crystal structure? Chunhu Tan (Tue Oct 11 2005 - 18:22:39 CDT)
- AMBER: F,Cl,Br,I in MMPBSA Yong Xu (Wed Oct 12 2005 - 03:58:53 CDT)
- AMBER: troubleshooting replica exchange Zhuang (Wed Oct 12 2005 - 18:46:08 CDT)
- AMBER: how can I constitute T-phosphotyrosine group ? luaj_at_sohu.com (Wed Oct 12 2005 - 23:50:16 CDT)
- AMBER: AMBER goes in a Loop Imran Khan (Thu Oct 13 2005 - 12:05:40 CDT)
- AMBER: Scaling factor of NMR restraint FyD (Fri Oct 14 2005 - 09:28:24 CDT)
- AMBER: oxidised methionine residue Megan G (Fri Oct 14 2005 - 10:45:21 CDT)
- AMBER: again: F, Cl, Br, I in MMPBSA Yong Xu (Fri Oct 14 2005 - 22:07:59 CDT)
- AMBER: GNU Autotool integration for Amber8! mk mk (Sun Oct 16 2005 - 02:06:11 CDT)
- AMBER: Free energy for L and D amino acids S.Sundar Raman (Sun Oct 16 2005 - 10:40:24 CDT)
- AMBER: Cyclohexane solvent Box chaiann ng (Sun Oct 16 2005 - 23:43:21 CDT)
- AMBER: antechamber -- missing improper torsions David Mobley (Mon Oct 17 2005 - 13:33:43 CDT)
- AMBER: pca with ptraj Claire Zerafa (Mon Oct 17 2005 - 18:11:21 CDT)
- AMBER: program to visualize crystal symmetries Hannes Loeffler (Tue Oct 18 2005 - 03:36:31 CDT)
- AMBER: problem with xleap Vlad Cojocaru (Tue Oct 18 2005 - 08:56:38 CDT)
- AMBER: Simple 3D Molecule Visualization Alec M. Resnick (Tue Oct 18 2005 - 11:29:43 CDT)
- Re: AMBER: Simple 3D Molecule Visualization Joachim Reichelt (Tue Oct 18 2005 - 11:45:42 CDT)
- Re: AMBER: Simple 3D Molecule Visualization Karsten Suhre (Tue Oct 18 2005 - 11:45:36 CDT)
- Re: AMBER: Simple 3D Molecule Visualization Mark Williamson (Tue Oct 18 2005 - 11:50:07 CDT)
- Re: AMBER: Simple 3D Molecule Visualization FyD (Tue Oct 18 2005 - 14:16:19 CDT)
- Re: AMBER: Simple 3D Molecule Visualization Furse, Kristina Elisabet (Tue Oct 18 2005 - 17:10:54 CDT)
- AMBER: Neutral C-terminal residue Sébastien Fiorucci (Wed Oct 19 2005 - 05:12:44 CDT)
- AMBER: Fw: pca with ptraj Claire Zerafa (Wed Oct 19 2005 - 07:02:08 CDT)
- AMBER: ptraj hbond analysis S.Sundar Raman (Wed Oct 19 2005 - 08:28:09 CDT)
- AMBER: amber file formats. Shishir (Wed Oct 19 2005 - 15:16:04 CDT)
- AMBER: (no subject) mathew k varghese (Thu Oct 20 2005 - 00:19:06 CDT)
- AMBER: porblem in ptraj julien (Thu Oct 20 2005 - 04:19:47 CDT)
- AMBER: trouble in calculating the distance between O atom of water molecule and atom of residue haixiao jin (Thu Oct 20 2005 - 05:49:29 CDT)
- AMBER: REMD error!!! Anthony Cruz (Thu Oct 20 2005 - 08:53:18 CDT)
- Re: AMBER: REMD error!!! Carlos Simmerling (Thu Oct 20 2005 - 07:05:41 CDT)
- Re: AMBER: REMD error!!! Anthony Cruz (Thu Oct 20 2005 - 09:45:32 CDT)
- Re: AMBER: REMD error!!! Carlos Simmerling (Thu Oct 20 2005 - 08:35:13 CDT)
- Re: AMBER: REMD error!!! Anthony Cruz (Thu Oct 20 2005 - 11:48:12 CDT)
- Re: AMBER: REMD error!!! Carlos Simmerling (Thu Oct 20 2005 - 10:00:22 CDT)
- Re: AMBER: REMD error!!! Guanglei Cui (Thu Oct 20 2005 - 10:51:21 CDT)
- Re: AMBER: REMD error!!! Carlos Simmerling (Thu Oct 20 2005 - 11:14:25 CDT)
- Re: AMBER: REMD error!!! Anthony Cruz (Thu Oct 20 2005 - 09:45:32 CDT)
- Re: AMBER: REMD error!!! Wei Zhang (Thu Oct 20 2005 - 11:15:51 CDT)
- Re: AMBER: REMD error!!! Carlos Simmerling (Thu Oct 20 2005 - 11:28:15 CDT)
- Re: AMBER: REMD error!!! Anthony Cruz (Thu Oct 20 2005 - 14:13:20 CDT)
- Re: AMBER: REMD error!!! Carlos Simmerling (Thu Oct 20 2005 - 12:30:13 CDT)
- Fwd: Re: AMBER: REMD error!!! Anthony Cruz (Fri Oct 28 2005 - 08:06:39 CDT)
- Re: Re: AMBER: REMD error!!! Melinda Layten (Fri Oct 28 2005 - 10:26:46 CDT)
- Re: Fwd: Re: AMBER: REMD error!!! Carlos Simmerling (Fri Oct 28 2005 - 09:38:48 CDT)
- AMBER: REMD trajectory error!!! Anthony Cruz (Fri Oct 28 2005 - 13:10:18 CDT)
- Re: AMBER: REMD trajectory error!!! Carlos Simmerling (Fri Oct 28 2005 - 12:06:44 CDT)
- Re: AMBER: REMD error!!! Carlos Simmerling (Thu Oct 20 2005 - 11:28:15 CDT)
- Re: AMBER: REMD error!!! Carlos Simmerling (Thu Oct 20 2005 - 07:05:41 CDT)
- AMBER: delphi and surface in MMPBSA Yong Xu (Thu Oct 20 2005 - 09:07:17 CDT)
- AMBER: Targeted MD Whitney Allen (Thu Oct 20 2005 - 13:04:31 CDT)
- AMBER: xleap with modified residue Whitney Allen (Thu Oct 20 2005 - 13:12:42 CDT)
- Re: (2) Re: AMBER: F,Cl,Br,I in MMPBSA Yong Xu (Thu Oct 20 2005 - 20:21:33 CDT)
- AMBER: Dipolar coupling refinement s0344557_at_sms.ed.ac.uk (Fri Oct 21 2005 - 08:04:39 CDT)
- AMBER: using position restraints in target MD? Ben-Zhuo Lu (Fri Oct 21 2005 - 13:58:05 CDT)
- AMBER: Hi..I am new to AMBER.(compilation with MPICH-G2 libraries)... konnipati murali (Sun Oct 23 2005 - 01:38:28 CDT)
- AMBER: rdparm: a parameter array overflowed ying xiong (Mon Oct 24 2005 - 04:17:33 CDT)
- AMBER: compiling amber with pgi 5.2.4 Hannes Barsch (Mon Oct 24 2005 - 07:21:11 CDT)
- AMBER: error in safe Claire Zerafa (Mon Oct 24 2005 - 08:18:50 CDT)
- AMBER: Is MM-PBSA doable for transition metals ? Cenk Andac (Mon Oct 24 2005 - 11:55:27 CDT)
- Re: AMBER: Is MM-PBSA doable for transition metals ? Bill Ross (Mon Oct 24 2005 - 12:10:44 CDT)
- AMBER: atmtypenumbers Yong Xu (Mon Oct 24 2005 - 22:25:00 CDT)
- AMBER: How to calculate binding free energy of ligand bound to complex with two active-site water molecules? haixiao jin (Tue Oct 25 2005 - 02:55:46 CDT)
- AMBER: Using RED to calculate partial charges of new amino acid Donald Thomas (Tue Oct 25 2005 - 09:50:40 CDT)
- AMBER: I am looking forward to hearing from you. Mehdi Davari (Tue Oct 25 2005 - 13:38:28 CDT)
- AMBER: parmchk error : Cannot open CONNECT.TPL, exit Nitin Bhardwaj (Tue Oct 25 2005 - 16:08:02 CDT)
- AMBER: Antechamber error Nitin Bhardwaj (Tue Oct 25 2005 - 18:27:39 CDT)
- AMBER: AMBER tests (x86-64, PGI / Intel) Hannes Barsch (Wed Oct 26 2005 - 02:54:36 CDT)
- AMBER: Increase the runtime of Amber benchmarks Imran Khan (Wed Oct 26 2005 - 04:23:10 CDT)
- AMBER: seg fault error in resp Kateryna Miroshnychenko (Wed Oct 26 2005 - 08:24:37 CDT)
- Re: AMBER: seg fault error in resp FyD (Wed Oct 26 2005 - 09:06:40 CDT)
- Re: AMBER: seg fault error in resp Kateryna Miroshnychenko (Wed Oct 26 2005 - 10:26:37 CDT)
- Re: AMBER: seg fault error in resp Bill Ross (Wed Oct 26 2005 - 11:35:38 CDT)
- Re: AMBER: seg fault error in resp Kateryna Miroshnychenko (Thu Oct 27 2005 - 09:14:24 CDT)
- Re: AMBER: seg fault error in resp Bill Ross (Thu Oct 27 2005 - 13:40:47 CDT)
- AMBER: xleap, opteron, pgi and segmentation fault. Lars Packschies (Wed Oct 26 2005 - 08:57:40 CDT)
- AMBER: using constraints with QM/MM Jakub Kostal (Wed Oct 26 2005 - 13:58:40 CDT)
- AMBER: Re: restraints xiaoqin huang (Wed Oct 26 2005 - 16:25:03 CDT)
- AMBER: some questions when using ATP du yongchun (Wed Oct 26 2005 - 21:28:44 CDT)
- AMBER: restart file and crd file Lishan Yao (Thu Oct 27 2005 - 08:37:29 CDT)
- Re: AMBER: restart file and crd file Mingfeng Yang (Thu Oct 27 2005 - 11:11:16 CDT)
- Re: AMBER: restart file and crd file Carlos Simmerling (Thu Oct 27 2005 - 11:18:18 CDT)
- Re: AMBER: restart file and crd file Lishan Yao (Thu Oct 27 2005 - 10:33:20 CDT)
- Re: AMBER: restart file and crd file Carlos Simmerling (Thu Oct 27 2005 - 14:03:13 CDT)
- Re: AMBER: restart file and crd file Lishan Yao (Thu Oct 27 2005 - 12:54:26 CDT)
- Re: AMBER: restart file and crd file Mingfeng Yang (Thu Oct 27 2005 - 14:40:51 CDT)
- Re: AMBER: restart file and crd file Lishan Yao (Thu Oct 27 2005 - 13:59:29 CDT)
- Re: AMBER: restart file and crd file Carlos Simmerling (Thu Oct 27 2005 - 15:03:20 CDT)
- AMBER: Cluster analysis by MMTSB or ptraj Shuting Wei (Fri Oct 28 2005 - 10:30:49 CDT)
- Re: AMBER: restart file and crd file Heiko Meyer (Fri Nov 04 2005 - 06:56:41 CST)
- Re: AMBER: restart file and crd file Heiko Meyer (Fri Nov 04 2005 - 09:49:18 CST)
- RE: AMBER: restart file and crd file Ross Walker (Fri Nov 04 2005 - 10:22:41 CST)
- Re: AMBER: restart file and crd file Lishan Yao (Thu Oct 27 2005 - 10:33:20 CDT)
- AMBER: problems installing amber 7 on a RH Linux 8 machine Marios Constantinou (Thu Oct 27 2005 - 10:28:00 CDT)
- AMBER: Unknown atomtypes in amber Nitin Bhardwaj (Thu Oct 27 2005 - 12:26:49 CDT)
- AMBER: Metals with Amber Anton B. Guliaev (Fri Oct 28 2005 - 12:09:07 CDT)
- AMBER: vdw of h atoms Gustavo Pierdominici Sottile (Fri Oct 28 2005 - 14:16:10 CDT)
- Re: AMBER: Metals with Amber Bill Ross (Fri Oct 28 2005 - 15:56:50 CDT)
- Re: AMBER: vdw of h atoms Bill Ross (Fri Oct 28 2005 - 17:13:59 CDT)
- AMBER: Improper Torsional Parameters Ilyas Yildirim (Fri Oct 28 2005 - 19:59:35 CDT)
- AMBER: rounding in xleap when using saveoff command... Ilyas Yildirim (Fri Oct 28 2005 - 20:26:22 CDT)
- AMBER: amber7.0: F,Br,radius in MMPBSA Yong Xu (Sat Oct 29 2005 - 09:46:00 CDT)
- AMBER: amber7.0: F,Br,radius in MMPBSA Yong Xu (Sat Oct 29 2005 - 09:47:21 CDT)
- AMBER: with two water molecules in active site, how to calculate the free energy of ligand bound to complex? haixiao jin (Mon Oct 31 2005 - 00:27:08 CST)
- AMBER: GBSA simulation problem Guillaume Bollot (Mon Oct 31 2005 - 02:23:26 CST)
- AMBER: tkbc2 Mingfeng Yang (Mon Oct 31 2005 - 16:59:17 CST)
- AMBER: mm_pbsa problem emilia wu (Mon Oct 31 2005 - 20:53:51 CST)
- AMBER: About WHAM program Atsutoshi Okabe (Tue Nov 01 2005 - 21:29:14 CST)
- AMBER: fedora installation problem Simon Whitehead (Wed Nov 02 2005 - 10:11:26 CST)
- AMBER: ptraj distance mask Peter Gannett (Wed Nov 02 2005 - 11:04:48 CST)
- AMBER: Leap error: Could not find atom type: CE Vlad Cojocaru (Wed Nov 02 2005 - 12:08:33 CST)
- AMBER: Density of Cyclohexane box chaiann ng (Wed Nov 02 2005 - 21:57:49 CST)
- AMBER: EEL and EAMBER values Andrew Box (Wed Nov 02 2005 - 22:19:14 CST)
- AMBER: REM difficulties Peter Varnai (Thu Nov 03 2005 - 12:15:01 CST)
- AMBER: Ask for helpf to get examples for MM-PBSA with AMBER8 Peng Tao (Thu Nov 03 2005 - 13:45:39 CST)
- AMBER: How to generate a RMSd-residue number graph using AMBER8 ptraj? Jiapu.Zhang_at_csiro.au (Thu Nov 03 2005 - 19:16:17 CST)
- AMBER: MM_PBSA problem haixiao jin (Fri Nov 04 2005 - 00:43:49 CST)
- AMBER: Leap task Vlad Cojocaru (Fri Nov 04 2005 - 05:44:39 CST)
- AMBER: just one more try:) xleap, opteron, pgi and segmentation fault. (fwd) Lars Packschies (Fri Nov 04 2005 - 06:09:40 CST)
- AMBER: PMEMD limitation on NFFT Chng Choon-Peng (Fri Nov 04 2005 - 18:38:38 CST)
- AMBER: About WHAM program Atsutoshi Okabe (Sat Nov 05 2005 - 22:16:43 CST)
- AMBER: bug report Ye Mei (Sun Nov 06 2005 - 00:21:50 CST)
- AMBER: bugfix 49 Lihua Wang (Sun Nov 06 2005 - 17:05:20 CST)
- AMBER: rluo_at_uci.edu (Sun Nov 06 2005 - 18:42:30 CST)
- AMBER: DNA simulations Andrew Box (Sun Nov 06 2005 - 23:15:15 CST)
- AMBER: AMBER 8 compilation with lahey F95 ! Pradipta Bandyopadhyay (Mon Nov 07 2005 - 04:13:57 CST)
- AMBER: addition to the last mail (lahey F95) ! Pradipta Bandyopadhyay (Mon Nov 07 2005 - 04:20:06 CST)
- AMBER: XRED II error while initializing tomjas_at_poczta.onet.pl (Mon Nov 07 2005 - 06:17:12 CST)
- AMBER: tRNA's modified bases in the Amber parameters database Whitney Allen (Mon Nov 07 2005 - 08:52:45 CST)
- AMBER: Making movie from AMBER trajectory Varsha Goyal (Mon Nov 07 2005 - 10:03:01 CST)
- Re: AMBER: Making movie from AMBER trajectory Carlos Simmerling (Mon Nov 07 2005 - 10:28:26 CST)
- Re: AMBER: Making movie from AMBER trajectory Varsha Goyal (Mon Nov 07 2005 - 11:23:50 CST)
- Re: AMBER: Making movie from AMBER trajectory Carlos Simmerling (Mon Nov 07 2005 - 11:45:27 CST)
- Re: AMBER: Making movie from AMBER trajectory Varsha Goyal (Mon Nov 07 2005 - 12:13:09 CST)
- Re: AMBER: Making movie from AMBER trajectory Carlos Simmerling (Mon Nov 07 2005 - 12:28:20 CST)
- Re: AMBER: Making movie from AMBER trajectory David Bevan (Mon Nov 07 2005 - 12:50:19 CST)
- Re: AMBER: Making movie from AMBER trajectory Knut Langsetmo (Mon Nov 07 2005 - 12:42:08 CST)
- Re: AMBER: Making movie from AMBER trajectory caoch_at_cherry.bio.titech.ac.jp (Mon Nov 07 2005 - 20:09:16 CST)
- Re: AMBER: Making movie from AMBER trajectory Carlos Simmerling (Tue Nov 08 2005 - 06:44:38 CST)
- Re: AMBER: Making movie from AMBER trajectory YoungJin Cho (Tue Nov 08 2005 - 09:00:07 CST)
- Re: AMBER: Making movie from AMBER trajectory Mingfeng Yang (Tue Nov 08 2005 - 10:01:52 CST)
- Re: AMBER: Making movie from AMBER trajectory David E. Konerding (Tue Nov 08 2005 - 12:56:55 CST)
- Re: AMBER: Making movie from AMBER trajectory David E. Konerding (Tue Nov 08 2005 - 17:01:13 CST)
- Re: AMBER: Making movie from AMBER trajectory using UCSF Chimera David E. Konerding (Wed Nov 09 2005 - 10:21:29 CST)
- Re: AMBER: Making movie from AMBER trajectory Varsha Goyal (Mon Nov 07 2005 - 11:23:50 CST)
- RE: AMBER: Making movie from AMBER trajectory Ross Walker (Mon Nov 07 2005 - 10:55:48 CST)
- Re: AMBER: Making movie from AMBER trajectory Carlos Simmerling (Mon Nov 07 2005 - 10:28:26 CST)
- AMBER: calculating time correlation functions with ptraj John S Zintsmaster (Mon Nov 07 2005 - 10:39:38 CST)
- AMBER: mm_pbsa Wei Chen (Wed Nov 09 2005 - 13:51:01 CST)
- Re: AMBER: mm_pbsa Ray Luo (Tue Nov 08 2005 - 23:26:52 CST)
- Re: AMBER: mm_pbsa Wei Chen (Fri Nov 11 2005 - 11:21:32 CST)
- Re: AMBER: mm_pbsa Ray Luo (Fri Nov 11 2005 - 17:57:04 CST)
- Re: AMBER: mm_pbsa Wei Chen (Sat Nov 12 2005 - 22:45:14 CST)
- Re: AMBER: mm_pbsa Ray Luo (Sat Nov 12 2005 - 02:09:13 CST)
- Re: AMBER: mm_pbsa Wei Chen (Mon Nov 14 2005 - 16:06:44 CST)
- Re: Re: AMBER: mm_pbsa zgleo (Sun Jul 31 2005 - 10:26:02 CDT)
- AMBER: memory_mm_pbsa Wei Chen (Mon Aug 01 2005 - 22:00:34 CDT)
- RE: AMBER: memory_mm_pbsa Ross Walker (Mon Aug 01 2005 - 22:14:47 CDT)
- RE: AMBER: memory_mm_pbsa Wei Chen (Mon Aug 01 2005 - 23:03:34 CDT)
- Re: AMBER: mm_pbsa Wei Chen (Fri Nov 11 2005 - 11:21:32 CST)
- Re: AMBER: mm_pbsa Cenk Andac (Thu Nov 10 2005 - 08:08:24 CST)
- Re: AMBER: mm_pbsa Ray Luo (Tue Nov 08 2005 - 23:26:52 CST)
- AMBER: Resp install problem Jianzhong Liu (Wed Nov 09 2005 - 17:21:09 CST)
- Re: AMBER: Resp install problem David A. Case (Wed Nov 09 2005 - 17:51:10 CST)
- AMBER: Resp install problem, again Jianzhong Liu (Thu Nov 10 2005 - 10:03:24 CST)
- Re: AMBER: Resp install problem, again David A. Case (Thu Nov 10 2005 - 11:39:49 CST)
- Re: AMBER: Resp install problem, again Jianzhong Liu (Wed Nov 16 2005 - 12:14:51 CST)
- Re: AMBER: Resp install problem, again David A. Case (Wed Nov 16 2005 - 12:43:13 CST)
- Re: AMBER: Resp install problem, again Jianzhong Liu (Wed Nov 16 2005 - 12:55:06 CST)
- Re: AMBER: Resp install problem, again David A. Case (Wed Nov 16 2005 - 15:53:27 CST)
- Re: AMBER: Resp install problem, again FyD (Thu Nov 10 2005 - 15:49:21 CST)
- AMBER: Resp install problem, again Jianzhong Liu (Thu Nov 10 2005 - 10:03:24 CST)
- Re: AMBER: Resp install problem David A. Case (Wed Nov 09 2005 - 17:51:10 CST)
- AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Nitin Bhardwaj (Wed Nov 09 2005 - 18:55:41 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Ilyas Yildirim (Wed Nov 09 2005 - 21:56:24 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Nitin Bhardwaj (Thu Nov 10 2005 - 10:40:21 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list David A. Case (Thu Nov 10 2005 - 11:00:12 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Nitin Bhardwaj (Thu Nov 10 2005 - 11:13:33 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list David A. Case (Fri Nov 11 2005 - 20:58:21 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Ilyas Yildirim (Thu Nov 10 2005 - 20:58:23 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Nitin Bhardwaj (Fri Nov 11 2005 - 10:25:52 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list David A. Case (Mon Nov 14 2005 - 11:01:25 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Nitin Bhardwaj (Tue Nov 15 2005 - 18:11:31 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Ilyas Yildirim (Tue Nov 15 2005 - 22:43:09 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list David A. Case (Wed Nov 16 2005 - 10:56:44 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Nitin Bhardwaj (Thu Nov 10 2005 - 10:40:21 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Ilyas Yildirim (Wed Nov 09 2005 - 21:56:24 CST)
- Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list Bill Ross (Wed Nov 09 2005 - 19:40:41 CST)
- AMBER: ESP exceeds the MAXESP(20000), nag raj (Thu Nov 10 2005 - 04:36:37 CST)
- AMBER: restart coordinate file s0344557_at_sms.ed.ac.uk (Thu Nov 10 2005 - 07:55:43 CST)
- Re: AMBER: restart coordinate file Bill Ross (Thu Nov 10 2005 - 09:42:53 CST)
- AMBER: Error message Sukjoon Yoon (Mon Nov 14 2005 - 02:14:07 CST)
- AMBER: RESP problem RESP laura zan (Mon Nov 14 2005 - 07:54:28 CST)
- AMBER: iwork array for nmr Peter Varnai (Mon Nov 14 2005 - 14:20:38 CST)
- AMBER: Antechamber/Leap, problem with Improper angles Christophe Guilbert (Mon Nov 14 2005 - 20:06:28 CST)
- AMBER: ew_legal.h Yam (Mon Nov 14 2005 - 20:54:03 CST)
- AMBER: calculating end-end distance C Balasubramanian (Tue Nov 15 2005 - 04:24:21 CST)
- AMBER: recent Chimera MD enhancements Eric Pettersen (Tue Nov 15 2005 - 14:59:16 CST)
- AMBER: pH=1 MD simulation Harianto Tjong (Tue Nov 15 2005 - 16:16:12 CST)
- AMBER: Quantifying DNA perterbation Kara Di Giorgio (Tue Nov 15 2005 - 19:44:03 CST)
- AMBER: anal and periodic boundary conditions Rachel Burdge (Wed Nov 16 2005 - 10:18:34 CST)
- Re: AMBER: anal and periodic boundary conditions Bill Ross (Wed Nov 16 2005 - 11:32:57 CST)
- AMBER: using periodic boundary conditions to create infinite double helix Kenley Barrett (Wed Nov 16 2005 - 11:32:39 CST)
- AMBER: ptraj Hbond analysis mathew k varghese (Wed Nov 16 2005 - 22:28:52 CST)
- AMBER: FATAL error with ATP, MG2 residue Michael Mazanetz (Thu Nov 17 2005 - 03:41:12 CST)
- AMBER: need clarification on EWALD BOMB error S.Sundar Raman (Thu Nov 17 2005 - 04:03:22 CST)
- AMBER: FATAL error with ATP and MG2 - fixed Michael Mazanetz (Thu Nov 17 2005 - 06:45:27 CST)
- AMBER: RED and EP from GAMESS Vlad Cojocaru (Fri Nov 18 2005 - 04:12:49 CST)
- AMBER: Polarization & energy analysis GUILBAUD Philippe 153683 (Fri Nov 18 2005 - 04:52:26 CST)
- AMBER: RED and EP from GAMESS FyD (Fri Nov 18 2005 - 06:04:47 CST)
- AMBER: Question about PDB format FyD (Sat Nov 19 2005 - 02:11:23 CST)
- AMBER: RED&GAMESS: sorry ... my mistake Vlad Cojocaru (Fri Nov 18 2005 - 06:28:31 CST)
- AMBER: MM/PBSA basic questions Peng Tao (Fri Nov 18 2005 - 09:41:26 CST)
- AMBER: RED: extra variable definition Vlad Cojocaru (Sun Nov 20 2005 - 08:48:32 CST)
- AMBER: How to use XLEAP to link one atom in a monomer to another atom in another monomer? (where both the 2 monomers are in a same pdb file) Jiapu.Zhang_at_csiro.au (Sun Nov 20 2005 - 19:35:57 CST)
- RE: AMBER: How to use XLEAP to link one atom in a monomer to another atom in another monomer? (where both the 2 monomers are in a same pdb file) Ross Walker (Sun Nov 20 2005 - 23:59:18 CST)
- RE: AMBER: How to use XLEAP to link one atom in a monomer to another atom in another monomer? (where both the 2 monomers are in a same pdb file) Ross Walker (Mon Nov 21 2005 - 10:33:44 CST)
- RE: AMBER: How to use XLEAP to link one atom in a monomer to another atom in ano Andrew Box (Mon Nov 21 2005 - 16:48:34 CST)
- AMBER: how to extract the residues of first solvation shell from the simulated system after the production? gtg549i_at_mail.gatech.edu (Mon Nov 21 2005 - 17:46:04 CST)
- Re: AMBER: how to extract the residues of first solvation shell from the simulated system after the production? Thomas Cheatham (Mon Nov 21 2005 - 21:50:09 CST)
- Re: AMBER: how to extract the residues of first solvation shell from the simulated system after the production? gtg549i_at_mail.gatech.edu (Tue Nov 22 2005 - 09:13:49 CST)
- Re: AMBER: how to extract the residues of first solvation shell from the simulated system after the production? gtg549i_at_mail.gatech.edu (Tue Nov 22 2005 - 15:28:36 CST)
- Re: AMBER: how to extract the residues of first solvation shell from the simulated system after the production? Thomas Cheatham (Tue Nov 22 2005 - 22:35:11 CST)
- AMBER: how to extract the residues of first solvation shell from the simulated system after the production? gtg549i_at_mail.gatech.edu (Mon Nov 21 2005 - 17:46:04 CST)
- AMBER: Will Amber 9 available? Xioling Chuang (Sun Nov 20 2005 - 19:54:55 CST)
- AMBER: temprature and restraint in constant volumm MD tonglei (Mon Nov 21 2005 - 02:55:40 CST)
- AMBER: average struct without solvent C Balasubramanian (Mon Nov 21 2005 - 07:51:26 CST)
- AMBER: ANAL problem Sébastien Fiorucci (Mon Nov 21 2005 - 11:18:07 CST)
- AMBER: Question about PB bomb zgleo (Mon Nov 21 2005 - 20:11:08 CST)
- AMBER: Question of PB bomb zgleo (Mon Nov 21 2005 - 22:59:54 CST)
- AMBER: sp0 console message after using addAtomTypes Lorna Stimson (Tue Nov 22 2005 - 02:44:19 CST)
- AMBER: Leap handling crystallographic waters Vlad Cojocaru (Tue Nov 22 2005 - 07:44:57 CST)
- Re: AMBER: Leap handling crystallographic waters Andy Purkiss (Tue Nov 22 2005 - 08:31:07 CST)
- Re: AMBER: Leap handling crystallographic waters Furse, Kristina Elisabet (Tue Nov 22 2005 - 11:13:57 CST)
- RE: AMBER: Leap handling crystallographic waters Furse, Kristina Elisabet (Tue Nov 22 2005 - 13:18:34 CST)
- AMBER: RE: gaff sugar residue instability hayden (Tue Nov 22 2005 - 13:32:14 CST)
- AMBER: GRID program used to add ions and solvate AMBER minimized structures Vlad Cojocaru (Tue Nov 22 2005 - 08:53:55 CST)
- AMBER: MM_PBSA problem Zhang Bing (Tue Nov 22 2005 - 09:37:32 CST)
- AMBER: Using OPLS atom types Lorna Stimson (Tue Nov 22 2005 - 10:18:48 CST)
- Re: AMBER: Using OPLS atom types Bill Ross (Tue Nov 22 2005 - 11:44:16 CST)
- AMBER: MM_PBSA problem---Illegal division by zero at ... Zhang Bing (Tue Nov 22 2005 - 18:15:40 CST)
- AMBER: cluster analysis mathew k varghese (Wed Nov 23 2005 - 01:03:27 CST)
- AMBER: MM_PBSA question Tiziano Tuccinardi (Thu Nov 24 2005 - 03:01:53 CST)
- AMBER: Parameters for S-substituted nucleic acids E.A.Moore (Thu Nov 24 2005 - 03:29:18 CST)
- Re: AMBER: gaff sugar residue instability Bill Ross (Thu Nov 24 2005 - 12:48:02 CST)
- AMBER: aloks_at_mbu.iisc.ernet.in (Fri Nov 25 2005 - 06:11:01 CST)
- Re: AMBER: Zhiguo Liu (Sat Jul 09 2005 - 03:39:43 CDT)
- Re: Re: AMBER: emilia wu (Tue Apr 05 2005 - 01:43:49 CDT)
- RE: Re: AMBER: Wells, David H (Tue Apr 05 2005 - 02:13:56 CDT)
- RE: Re: AMBER: glc0358_at_vip.sina.com (Sat Jul 09 2005 - 05:37:54 CDT)
- AMBER: Position Restraints! Karthikeyan Pasupathy (Sat Jul 09 2005 - 12:24:51 CDT)
- Re: AMBER: Position Restraints! justin litchfield (Sat Jul 09 2005 - 19:08:15 CDT)
- RE: Re: AMBER: Shan Jufang (Sat Jul 09 2005 - 14:37:54 CDT)
- Re: RE: Re: AMBER: emilia wu (Tue Apr 05 2005 - 07:25:42 CDT)
- Re: RE: Re: AMBER: Zhiguo Liu (Sun Jul 10 2005 - 02:37:36 CDT)
- Re: AMBER: Zhiguo Liu (Sat Jul 09 2005 - 03:39:43 CDT)
- AMBER: PARM-99 Angelo Pugliese (Fri Nov 25 2005 - 08:03:23 CST)
- AMBER: reordering atoms after antechamber Vlad Cojocaru (Fri Nov 25 2005 - 11:02:38 CST)
- Re: AMBER: PARM-99 Piotr Cieplak (Fri Nov 25 2005 - 19:46:31 CST)
- AMBER: How to wrap a truncated octahedron water box into the primary box? Xioling Chuang (Sat Nov 26 2005 - 04:19:44 CST)
- AMBER: input for mm_pbsa Xioling Chuang (Sun Nov 27 2005 - 00:31:09 CST)
- AMBER: Comparing EELEC from amber and that calculated in the trivial fashion. Pavan G (Sun Nov 27 2005 - 21:14:48 CST)
- AMBER: How to check for water mediated hydrogen bonds? Hannes Loeffler (Sun Nov 27 2005 - 22:52:44 CST)
- AMBER: Cluster - input files Ananda Rama Krishnan Selvaraj (Mon Nov 28 2005 - 04:37:22 CST)
- AMBER: CD spectrum Anthony Cruz (Mon Nov 28 2005 - 11:58:34 CST)
- AMBER: antechamber charge methods Sagar S. Rane (Mon Nov 28 2005 - 10:20:45 CST)
- AMBER: MM_PBSA stopped at some snapshot Xioling Chuang (Mon Nov 28 2005 - 23:57:54 CST)
- AMBER: AMBER compilation with -DREM Sergey Krishtal (Tue Nov 29 2005 - 06:45:46 CST)
- AMBER: some problems with Antechamber David Mobley (Tue Nov 29 2005 - 10:39:26 CST)
- AMBER: constant pressure vs. constant volume heating Vlad Cojocaru (Tue Nov 29 2005 - 12:50:39 CST)
- Re: AMBER: constant pressure vs. constant volume heating Bill Ross (Tue Nov 29 2005 - 13:51:12 CST)
- AMBER: Solvation in trifluoroethanol Ann Vilan Tran (Tue Nov 29 2005 - 13:57:17 CST)
- AMBER: rdparm bug David Mobley (Tue Nov 29 2005 - 20:40:02 CST)
- AMBER: question convert crd files to pdb files Zhuang (Tue Nov 29 2005 - 22:02:08 CST)
- AMBER: parmchk segfaulting David A. Case (Tue Nov 29 2005 - 22:06:03 CST)
- AMBER: more data points on the parmchk problem David A. Case (Wed Nov 30 2005 - 09:30:12 CST)
- AMBER: ifort compiling problem Simon Whitehead (Wed Nov 30 2005 - 09:27:48 CST)
- AMBER: Targeted MD Whitney Allen (Wed Nov 30 2005 - 10:20:10 CST)
- AMBER: Fluorine in MM-PBSA (AMBER8) yuann_at_bioinfo.ndhu.edu.tw (Wed Nov 30 2005 - 10:30:36 CST)
- AMBER: Residual Dipolar Refinement RadhaKumari Yadav (Wed Nov 30 2005 - 11:16:23 CST)
- AMBER: Any way to get different charge on same type atom Jianzhong Liu (Wed Nov 30 2005 - 17:07:28 CST)
- AMBER: Creating an Ester with Antechamber/Gaff John O'Mahony (Thu Dec 01 2005 - 03:46:40 CST)
- AMBER: regarding ambpdb S.Sundar Raman (Thu Dec 01 2005 - 04:40:58 CST)
- AMBER: MD without a thermostat Vlad Cojocaru (Thu Dec 01 2005 - 09:32:57 CST)
- AMBER: no thermostat versus very weak thermostat Vlad Cojocaru (Thu Dec 01 2005 - 09:57:15 CST)
- AMBER: Some explanations of MM_PBSA @DECOMP OUTPUT file? Peng Tao (Thu Dec 01 2005 - 10:35:09 CST)
- AMBER: Mg2+ issues of using MM-PB/GBSA mingche Pan (Thu Dec 01 2005 - 13:01:24 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA Carlos Simmerling (Thu Dec 01 2005 - 13:26:11 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA Ray Luo (Wed Nov 30 2005 - 10:46:56 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA David A. Case (Thu Dec 01 2005 - 13:47:20 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA Thomas Cheatham (Thu Dec 01 2005 - 23:27:21 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA mingche Pan (Fri Dec 02 2005 - 10:32:15 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA mingche Pan (Fri Dec 02 2005 - 12:09:28 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA. . Don.Bashford_at_stjude.org (Mon Dec 05 2005 - 12:09:20 CST)
- AMBER: Radial Distribution functions by ptraj Priti Hansia (Thu Dec 01 2005 - 13:44:02 CST)
- AMBER: Position restraints and Models Steve Seibold (Thu Dec 01 2005 - 14:54:06 CST)
- AMBER: Questions about MM-PBSA in Amber8 zgleo (Thu Dec 01 2005 - 23:04:26 CST)
- AMBER: Problem in running AMBER 7 in solaris ! Pradipta Bandyopadhyay (Fri Dec 02 2005 - 03:17:19 CST)
- AMBER: Problem with sander test suites in solaris ! Pradipta Bandyopadhyay (Fri Dec 02 2005 - 08:26:05 CST)
- AMBER: ptraj crash error Simon Whitehead (Fri Dec 02 2005 - 11:51:47 CST)
- AMBER: rotational motion in periodic simulation Douali, Latifa (Fri Dec 02 2005 - 12:50:28 CST)
- AMBER: Replica-Exchange MD from AMBER8! Peng Tao (Fri Dec 02 2005 - 16:28:27 CST)
- AMBER: ERROR in readParm: ...failed to find BONDS_WITHOUT_HYDROGEN Rhoad, Jonathan S. (Fri Dec 02 2005 - 17:02:36 CST)
- AMBER: parmchk bug fix David A. Case (Fri Dec 02 2005 - 22:22:21 CST)
- AMBER: parmchk bug fix, with attachment David A. Case (Fri Dec 02 2005 - 22:33:20 CST)
- AMBER: Alignment tensor and Interia tensor RadhaKumari Yadav (Sat Dec 03 2005 - 10:58:01 CST)
- AMBER: The error during calculating PB with pbsa zhli_2000_at_126.com (Sun Dec 04 2005 - 22:39:19 CST)
- AMBER: RMSD Calculations Kara Di Giorgio (Mon Dec 05 2005 - 09:22:03 CST)
- AMBER: RESP: Question Carlos Jaime (Mon Dec 05 2005 - 11:43:16 CST)
- AMBER: 6-thioguanine E.A.Moore (Tue Dec 06 2005 - 08:31:59 CST)
- AMBER: MM_PBSA parameters Nelson Fonseca (Tue Dec 06 2005 - 09:26:55 CST)
- AMBER: hi Germán Sciaini (Wed Dec 07 2005 - 04:51:06 CST)
- AMBER: about resp JAVIER PEREZ (Wed Dec 07 2005 - 06:12:48 CST)
- AMBER: Relax in tLEaP ? FyD (Wed Dec 07 2005 - 08:00:38 CST)
- AMBER: Clustering - MMTSB Toolkit kclust kkirschn_at_hamilton.edu (Wed Dec 07 2005 - 12:43:52 CST)
- AMBER: Adding/recognizing calcium atoms Nitin Bhardwaj (Wed Dec 07 2005 - 15:24:38 CST)
- Re: AMBER: Adding/recognizing calcium atoms Bill Ross (Wed Dec 07 2005 - 15:32:05 CST)
- AMBER: error about using ambmask zhli_2000_at_126.com (Thu Dec 08 2005 - 07:40:34 CST)
- AMBER: Question on makeing up of missing atoms Benjamin Juhl (Fri Dec 09 2005 - 06:30:57 CST)
- AMBER: reading frcmod torsional parameters ivan_at_mmb.pcb.ub.es (Mon Dec 12 2005 - 07:44:36 CST)
- AMBER: question about mmpbsa cui wei (Tue Dec 13 2005 - 01:33:08 CST)
- AMBER: How to add water to calculate MMPBSA Kitiyaporn Wittayanarakul (Wed Dec 14 2005 - 12:06:53 CST)
- AMBER: nmode error: GNORM is greater than the requested maximum zhli_2000_at_126.com (Wed Dec 14 2005 - 20:16:07 CST)
- AMBER: error with compiling amber8 with lam on intel pc clusters Ye Mei (Wed Dec 14 2005 - 21:36:54 CST)
- AMBER: about antechamber(amber8) linfu (Thu Dec 15 2005 - 01:51:16 CST)
- AMBER: aniso and iso Yam (Thu Dec 15 2005 - 04:11:45 CST)
- AMBER: parameters for fluorine atom Morena Spreafico (Thu Dec 15 2005 - 06:33:52 CST)
- AMBER: Build for single precision David Caliga (Thu Dec 15 2005 - 09:31:02 CST)
- AMBER: parallel AMBER on cluster Kateryna Miroshnychenko (Thu Dec 15 2005 - 12:16:17 CST)
- Re: AMBER: parallel AMBER on cluster Carlos Simmerling (Thu Dec 15 2005 - 12:55:55 CST)
- AMBER: | ERROR: Could not read coords from rst file Jiapu.Zhang_at_csiro.au (Thu Dec 15 2005 - 20:26:46 CST)
- AMBER: installation on a dual core Barbault Florent (Fri Dec 16 2005 - 08:00:08 CST)
- AMBER: About Salt concentration Varsha Goyal (Fri Dec 16 2005 - 18:03:05 CST)
- AMBER: distance restraints Ed Pate (Sat Dec 17 2005 - 16:43:32 CST)
- AMBER: | ERROR: Could not read coords from *.rst Jiapu.Zhang_at_csiro.au (Sat Dec 17 2005 - 17:59:22 CST)
- AMBER: No exchange among replicas in REMD! Peng Tao (Sun Dec 18 2005 - 16:01:28 CST)
- Re: AMBER: No exchange among replicas in REMD! Carlos Simmerling (Sun Dec 18 2005 - 16:26:42 CST)
- Re: AMBER: No exchange among replicas in REMD! Peng Tao (Sun Dec 18 2005 - 19:45:03 CST)
- Re: AMBER: No exchange among replicas in REMD! Carlos Simmerling (Sun Dec 18 2005 - 20:23:14 CST)
- Re: AMBER: No exchange among replicas in REMD! Peng Tao (Mon Dec 19 2005 - 08:57:30 CST)
- Re: AMBER: No exchange among replicas in REMD! Carlos Simmerling (Mon Dec 19 2005 - 10:35:30 CST)
- Re: AMBER: No exchange among replicas in REMD! Peng Tao (Mon Dec 19 2005 - 12:35:24 CST)
- Re: AMBER: No exchange among replicas in REMD! Peng Tao (Sun Dec 18 2005 - 19:45:03 CST)
- Re: AMBER: No exchange among replicas in REMD! Carlos Simmerling (Sun Dec 18 2005 - 16:26:42 CST)
- AMBER: No exchange among replicas in REMD! Peng Tao (Sun Dec 18 2005 - 16:11:06 CST)
- AMBER: a quistion about compile cui wei (Mon Dec 19 2005 - 06:10:07 CST)
- Re: AMBER: a quistion about compile David A. Case (Mon Dec 19 2005 - 10:22:58 CST)
- Re: AMBER: a quistion about compile cui wei (Mon Dec 19 2005 - 19:00:20 CST)
- Re: AMBER: a quistion about compile snowyowls (Tue Dec 20 2005 - 07:30:07 CST)
- Re: AMBER: a quistion about compile David A. Case (Tue Dec 20 2005 - 10:56:58 CST)
- Re: AMBER: a quistion about compile snowyowls (Wed Dec 21 2005 - 08:53:21 CST)
- Re: AMBER: a quistion about compile David A. Case (Wed Dec 21 2005 - 15:01:52 CST)
- Re: AMBER: a quistion about compile snowyowls (Fri Dec 23 2005 - 06:32:52 CST)
- Re: AMBER: a quistion about compile Wei Zhang (Mon Dec 19 2005 - 11:01:22 CST)
- Re: AMBER: a quistion about compile David A. Case (Mon Dec 19 2005 - 10:22:58 CST)
- AMBER: MD problems (SHAKE) blakrose_at_gazeta.pl (Mon Dec 19 2005 - 06:49:41 CST)
- AMBER: Atoms restrain Angelo Pugliese (Mon Dec 19 2005 - 07:09:35 CST)
- AMBER: compiling leap with Xeon EM64 (suse linux 9.2) HL Eastwood (Mon Dec 19 2005 - 09:17:08 CST)
- AMBER: re: leap compilation problems xeon EM64 processor HL Eastwood (Mon Dec 19 2005 - 09:30:57 CST)
- AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 14:34:52 CST)
- Re: AMBER: MD problems/shake Thomas E. Cheatham, III (Mon Dec 19 2005 - 14:53:40 CST)
- Re: AMBER: MD problems/shake Bill Ross (Mon Dec 19 2005 - 14:59:04 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 16:45:43 CST)
- Re: AMBER: MD problems/shake Bill Ross (Mon Dec 19 2005 - 17:14:10 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 17:33:12 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 17:44:59 CST)
- Re: AMBER: MD problems/shake Bill Ross (Mon Dec 19 2005 - 17:50:33 CST)
- Re: AMBER: MD problems/shake Bill Ross (Mon Dec 19 2005 - 17:54:01 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 18:03:08 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 18:07:44 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Tue Dec 20 2005 - 17:17:45 CST)
- AMBER: rdc multiple tensors dmcelh_at_uchicago.edu (Mon Dec 19 2005 - 17:01:13 CST)
- AMBER: Ligand problem bybaker_at_itsa.ucsf.edu (Mon Dec 19 2005 - 18:40:22 CST)
- AMBER: Sander.LES questions Bing Liu (Tue Dec 20 2005 - 08:51:09 CST)
- AMBER: rmsd Anthony Cruz (Tue Dec 20 2005 - 13:17:51 CST)
- Fwd: AMBER: rdc multiple tensors dmcelh_at_uchicago.edu (Tue Dec 20 2005 - 11:55:51 CST)
- AMBER: Re: Ligand problem bybaker_at_itsa.ucsf.edu (Tue Dec 20 2005 - 12:50:03 CST)
- Re: AMBER: MD problems/shake-many thanks blakrose_at_gazeta.pl (Tue Dec 20 2005 - 17:04:24 CST)
- AMBER: some questions about nmode zhli_2000_at_126.com (Tue Dec 20 2005 - 20:30:22 CST)
- AMBER: No skew or curtosis when zero variance in moment Ye Mei (Wed Dec 21 2005 - 09:56:43 CST)
- AMBER: lib-4324 : UNRECOVERABLE library error lv haiting (Wed Dec 21 2005 - 20:31:46 CST)
- AMBER: Amber crashes at simulation in the NVT ensemble with the periodic box equiilbrated in the NPT ensemble. Sergey Krishtal (Thu Dec 22 2005 - 00:15:14 CST)
- AMBER: Merry Xmas Angelo Pugliese (Thu Dec 22 2005 - 05:43:14 CST)
- AMBER: increase the limit of restraintmask Sichun Yang (Thu Dec 22 2005 - 12:58:14 CST)
- AMBER: does the result of H bond is consistent with the âEele of MM_PBSA? haixiao jin (Thu Dec 22 2005 - 22:12:46 CST)
- AMBER: the averaged structure VS the specific snapshot haixiao jin (Thu Dec 22 2005 - 22:24:04 CST)
- AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN Priti Hansia (Fri Dec 23 2005 - 05:28:57 CST)
- AMBER: ambpdb TER problems Sam (Fri Dec 23 2005 - 10:23:26 CST)
- Re: AMBER: ambpdb TER problems David A. Case (Fri Dec 23 2005 - 19:53:50 CST)
- Re: AMBER: ambpdb TER problems samuel.arey_at_epfl.ch (Mon Dec 26 2005 - 13:26:27 CST)
- Re: AMBER: ambpdb TER problems Bill Ross (Mon Dec 26 2005 - 15:27:07 CST)
- AMBER: To post or mail to the list (subscribers only) ping jiang (Fri Dec 23 2005 - 14:07:45 CST)
- AMBER: (no subject) ping jiang (Fri Dec 23 2005 - 14:46:58 CST)
- AMBER: problem with improper torsions in parmchk Kateryna Miroshnychenko (Mon Dec 26 2005 - 10:55:54 CST)
- AMBER: building amino acid based surfactants? Eugene Billiot (Mon Dec 26 2005 - 15:25:33 CST)
- AMBER: problem with ssh and xleap A D (Tue Dec 27 2005 - 14:12:51 CST)
- AMBER: problem of calculate the charge ping jiang (Tue Dec 27 2005 - 18:47:16 CST)
- AMBER: problem of calculate the charge2 ping jiang (Tue Dec 27 2005 - 20:17:05 CST)
- AMBER: Question about partial charge for ligand molecules Woojin Lee (Wed Dec 28 2005 - 20:37:47 CST)
- AMBER: non bond over flow S.Sundar Raman (Wed Dec 28 2005 - 21:50:27 CST)
- AMBER:how to deal with metal ion? snowyowls (Fri Dec 30 2005 - 00:24:58 CST)
- Re: AMBER:how to deal with metal ion? samuel.arey_at_epfl.ch (Fri Dec 30 2005 - 04:56:08 CST)
- Re: AMBER:how to deal with metal ion? samuel.arey_at_epfl.ch (Fri Dec 30 2005 - 05:05:39 CST)
- Re: AMBER:how to deal with metal ion? Tim Meyer (Fri Dec 30 2005 - 10:05:06 CST)
- Re: AMBER:how to deal with metal ion? Tim Meyer (Fri Dec 30 2005 - 10:09:07 CST)
Last message date: Sat Dec 31 2005 - 12:51:27 CST
Archived on: Sat Dec 31 2005 - 12:51:44 CST
3972 messages sorted by: [ author ] [ date ] [ subject ]
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