AMBER Archive (2005)

Subject: AMBER: "personality" of Amber force field

From: Hui-Hsu Tsai (tsaih_at_ncifcrf.gov)
Date: Wed Mar 16 2005 - 10:01:00 CST

Dear Amber community,

I am writing this email to ask your comments on the "personality" of
different amber force fields and GB models.

In my GB + amber99 FF simulations, I oberserved the peptides and proteins
are strongly helix-prone. Does any one has experience on amber02 FF? Does
amber02 FF work better for b-strand formation? which GB model works
better? any comment is welcome!
Thanks.

Gavin

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