AMBER Archive (2005)

Subject: AMBER: ptraj correlation facility

From: Simon Whitehead (SJW084_at_bham.ac.uk)
Date: Fri Aug 19 2005 - 04:15:41 CDT

Dear all,
 
I was wondering if someone could possibly provide me with some guidance on how to use the correlation facility in ptraj? Please excuse my basic understanding. I would like to correlate the movements of one residue to another and possibly to several other residues, is this possible or can only specific atoms be correlated? If so, how can this be achieved? Is it also be possible to say correlate each residue to each other?
 
Many thanks
 
Simon Whitehead
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