AMBER Archive (2005)

Subject: Re: AMBER: capping

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Thu Apr 28 2005 - 01:41:48 CDT

Actually I believe the answer is to use a terminal-type residue.
I think there is probably some discussion of this in the manual.

Bill

> I have drawn those missing hydrogen atoms at the N terminal of free
> methionyl molecule but how to assign charge to the newly added hydrogen
> atoms. Since none of the options on the menu bar are able to assign
> charge.
>
> thanks
> amit
>
>
> >> Even leap doesnt include missing hydrogen atom at the N terminal.
> >
> > It may be easiest to draw this in using xleap.
> >
> > Bill
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