AMBER Archive (2005)

Subject: Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters

From: Wei Zhang (zweig_at_pku.edu.cn)
Date: Tue Apr 05 2005 - 02:49:38 CDT

it is a really weird error that you got. it says can't run cpp properly.

cpp is a short for "C pre-processor", which is seldom wrong.

maybe you can run this command on the console directly to see what you got:

cd /home/wxli/amber8/src/lib
cpp -traditional -I/usr/local/mpich/include -P \
-I/ home/wxli/amber8/src/include -DMPI sys.f > _sys.f

----- Original Message -----
From: "Wu Yingliang" <wuyliang_at_public.wh.hb.cn>
To: <amber_at_scripps.edu>
Sent: Tuesday, April 05, 2005 2:18 PM
Subject: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters

> Dear Amber Users,
>
> Recently, I tried to install Amber8 in the Linux-based clusters by running amber on AMD opterons accoring methods provided in Amber Home Page. There are some wrong messages as following:
>
> ***********************************
> Starting installation of Amber8 (parallel) at Fri
> Apr 1 17:22:16 CST 2005.
> mkdir ../exe
> cd sander; make parallel
> make[1]: Entering directory `/home/wxli/amber8/
> src/sander'
> cd ../lib; make sys.a
> make[2]: Entering directory `/home/wxli/amber8/
> src/lib'
> cpp -traditional -I/usr/local/mpich/include -P -I/
> home/wxli/amber8/src/include -DMPI sys.f >
> _sys.f
> cpp: fork: Resource temporarily unavailable
> make[2]: *** [sys.o] Error 1
> make[2]: Leaving directory `/home/wxli/amber8/src/
> lib'
> make[1]: *** [syslib] Error 2
> make[1]: Leaving directory `/home/wxli/amber8/src/
> sander'
> make: *** [parallel] Error 2
> ************************************
>
> I am looking forward to kindly help, and thanks a lot in advance!
>
>
>
> Best wishes,
>
> Wu Yingliang
> ˇˇˇˇˇˇˇˇˇˇˇˇˇˇ
> 2005-04-05
>
>
>
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