AMBER Archive (2005)

Subject: AMBER:how to analyse trajectory files

From: S.Sundar Raman (sundar02_at_gmail.com)
Date: Mon Feb 14 2005 - 03:17:39 CST

i am new user to amber. i don't know how to analyse the molecular
dynamics out put.i gave that file to ptraj.i could not able to
understand what ptraj is doing.how can i see the variation in potential
energy with time.is there any other trajectory viewing software is
there?please help me in this regard. 

-- 
S.Sundar Raman
Chemical Lab,
CLRI
Chennai-20
ph: 044-24411830
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