AMBER Archive (2005)

Subject: AMBER: leap saveamberparm chain types response

From: Stern, Julie (jvstern_at_bnl.gov)
Date: Thu Feb 17 2005 - 17:16:50 CST

Amber-ites,

In leap, the saveamberparm unit name.prmtop name.inpcrd results in
the following response.

Not Marking per-residue atom chain types.
Marking per-residue atom chain types.
  (Residues lacking connect0/connect1 -
   these don't have chain types marked:

        res total affected

        SCH 95
  )
 (no restraints)

What exactly does this mean? What does the 'residues lacking
connect0/connect1' mean? What does the chain types marked mean?
Or do you know where in the docs to find an explanation?

thanks

--Julie
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