AMBER Archive (2005)

Subject: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list

From: Nitin Bhardwaj (nbhardwaj_at_gmail.com)
Date: Wed Nov 09 2005 - 18:55:41 CST

Dear All,
  I have created the inpcrd and prmtop files a lipid molecule using
the antechamber. While doing this I used a single molecule. Everything
was fine.
Then I replicated the molecules to create a bilyer. When I load this
PDB file containing the bilayer, I get the following message:

In file [chirality.c], line 121
!FATAL: Message: Atom C67 is not in the first list.
I tried to follow the program "chirality.c" but could not get it.
Have any of you seen this problem before? Please let me know if anyone
can suggest a solution to the problem?
I am attaching a copy of a single lipid if you wanna look at it.
Rgds,
Thanks,
Nitin


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