AMBER Archive (2005)

Subject: AMBER: capping?

From: Hui-Hsu Tsai (tsaih_at_ncifcrf.gov)
Date: Tue Mar 08 2005 - 15:34:59 CST

Dear Amber Community,

I am doing simulations of short peptides which required to be acetylated
and amidated at N and C termini.
Is there any one here can give me some suggestions how to perform capping
in Amber? I would like to cap the peptides with Ace and Nme. I am a new
amber user. Any suggestion is appreciated. Thanks.

Gavin

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