AMBER Archive (2005)

Subject: AMBER: distance restraints

From: mathew k varghese (mathew_kvarghese_at_yahoo.co.in)
Date: Thu Apr 28 2005 - 02:00:16 CDT

Dear AMBER community,

The crystal structure of a bulged RNA contains
crystallographic waters. To run implicit solvent
simulation of the molecule position restraints are
imposed on the water molecules. During the dynamics
the RNA molecule bends in the opposite direction and
the water molecules are get seperated from the RNA. Is
there any way to restrain the distance of the water
molecules from the atoms of the RNA?
Thanks in advance

===========================================================================

/\/\athew

Mathew K Varghese
Research Scholar
School of Pure and Applied Physics
M.G.University
Kottayam, Kerala
India

email mathew_kvarghese_at_yahoo.co.in

===========================================================================

________________________________________________________________________
Yahoo! India Matrimony: Find your life partner online
Go to: http://yahoo.shaadi.com/india-matrimony
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu