AMBER Archive (2005)

Subject: AMBER: Saturated DNA bases

From: L.C. Heady (lch31_at_cam.ac.uk)
Date: Wed Jun 01 2005 - 03:55:54 CDT

Are there any parameters out there for DNA bases with a phosphate group
'saturated' with hydrogens, i.e. overall neutral charge? If not, how would
you reccommend trying to build the parameters without losing the benefit of
the well described force-fields for the charged bases? Many thanks, Lucy.

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