AMBER Archive (2005)

Subject: AMBER: input for mm_pbsa

• Previous message: Xioling Chuang: "AMBER: How to wrap a truncated octahedron water box into the primary box?"
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Dear All,

I am a new user in MM_PBSA. I would like to calculate the free energy
difference between two DNA strands using PBSA (proc = 2). I really have no
idea about setting some parameters, e.g. RADIOPT. Could anyone give me an
example input file for mm_pbsa.pl? The corresponding example files are also
welcome.
Thank you very much in advance.

Regards,
xioling

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• Previous message: Xioling Chuang: "AMBER: How to wrap a truncated octahedron water box into the primary box?"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]