AMBER Archive (2005)

Subject: AMBER: Minimization failure

From: S.Sundar Raman (sundar02_at_gmail.com)
Date: Tue Mar 29 2005 - 22:47:22 CST


dear all
i build a poly valine sequence using xleap. i tired to minimise the
system in water box and gas phase. both ended in repeated laminin
failure. but when i did the same system using discover minimzation
program, it minimized upto 0.001 RMS deviation value. how to minimuse
this using AMBER please help me in this regrad

-- 
S.Sundar Raman
Chemical Lab,
CLRI
Chennai-20
ph: 044-24411830
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu