AMBER Archive (2005)

Subject: AMBER: Warnings as a file

From: Pavan Ghatty (pavanamber_at_yahoo.com)
Date: Sun Apr 10 2005 - 23:37:21 CDT

Hi,

I want to know if the warnings given when we run the
"check" command can be obtained as a file rather than
we just copying and pasting them in emacs(or any word
processor for that matter).
I need the warnings to find the atoms that are too
close (some actually overlap) to the protein and
delete them from the pdb file. Now in my case, there
are around (hold your breath) 1400 warnings which I
need as a file which will be the input to a program
that will fish out the numbers of the atoms that are
close. Copying and pasting 1400 warnings becomes too
inconvenient.

Pavan

                
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