AMBER Archive (2005)

Subject: RE: AMBER: pdb files from traj file

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Wed Jul 13 2005 - 16:37:05 CDT

Yes,

for ptraj

trajin mytraj.mdcrd.gz
trajout mytraj.pdb pdb

Will write you a set of sequentially numbered pdb files for each frame in
your trajectory.

All the best
Ross

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|\oss Walker

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> -----Original Message-----
> From: owner-amber_at_scripps.edu
> [mailto:owner-amber_at_scripps.edu] On Behalf Of YoungJin Cho
> Sent: Wednesday, July 13, 2005 14:07
> To: amber_at_scripps.edu
> Subject: AMBER: pdb files from traj file
>
> Let me ask very simple question.
>
> Does anybody know how can get a pdb file from traj file?
> Not only the final pdb but also the others: I can see those from vmd
> but I have no idea how I can save them as pdb file. (So my
> question is
> how we can get pdb files from one traj file)
>
> Thanks in advance,
>
> Young-Jin
>
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