AMBER Archive (2005)

Subject: Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list

From: David A. Case (case_at_scripps.edu)
Date: Thu Nov 10 2005 - 11:00:12 CST

On Thu, Nov 10, 2005, Nitin Bhardwaj wrote:
>
> After these messages, the PDB file (containing 2 lipids) is loaded.
> When I say edit the PDB files, it connects the terminal carbon atoms
> of the two lipids by a bond (terminal carbon atom of one lipid with
> another terminal carbon atom of another lipid). There are TER entries
> after each of the two molecules.

Doesn't happen for me...everything looks fine, and there are no bonds between
the two lipids. Did you say which version of Amber you are using? What
operating system and compiler are you using?

...dac

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