AMBER Archive (2005)

Subject: AMBER: the averaged structure VS the specific snapshot

From: haixiao jin (jinhx952_at_gmail.com)
Date: Thu Dec 22 2005 - 22:24:04 CST

dear AMBER users,
     i have got the averaged structures of 400ps to 900ps of two MD
simulations and superimposed them to compare the differnce between them. is
it reasonable to get averaged structure to make comparsion? it seems that
the averaged structure is not a real structure. or should I get the specific
structure to do comparision? i am not sure. would someone help me? thank
you!

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