AMBER Archive (2005)

Subject: Re: AMBER: AMBER tutorial ambpdb question

From: David A. Case (case_at_scripps.edu)
Date: Mon Jan 10 2005 - 21:16:10 CST

On Mon, Jan 10, 2005, Kara Wald wrote:

> I can't get ambpdb to work. I type in: ambpdb -p
> polyAT_vac.prmtop < polyAT_vac_init_min.rst > polyAT_vac_init_min.pdb
> and get the message: Segmentation fault.

"Segmentation fault" is a not-very-helpful operating system message, generally
indicating a memory problem. It is not supposed to happen.

You should be able to continue the tutorial, skipping this step.

To figure out more, we need to know which version of Amber you are using, what
OS and compiler, etc. (Some developer should also make an ambpdb test case,
so that we could catch such problems earlier.)

...dac

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