AMBER Archive (2005)

Subject: AMBER: anal and periodic boundary conditions

From: Rachel Burdge (burdge_at_wustl.edu)
Date: Wed Nov 16 2005 - 10:18:34 CST


Hello-
I am using anal to calculate an energy matrix for my simulation. I know
this program doesn't recognize periodic boundary conditions, but if I
have PBC in my crd and topology files, and use a very large cutoff, will
it calculate interaction energies between periodic images?

Thanks!
Rachel Burdge

Baker Lab
Molecular Biophysics Graduate Program
Washington University in St. Louis
School of Medicine

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