AMBER Archive (2005)

Subject: AMBER: how to make the prepin file for dimer and clusters of organic molecule in Amber7

From: Ananda Rama Krishnan Selvaraj (ananda.selvaraj_at_chemie.uni-halle.de)
Date: Fri Apr 15 2005 - 03:11:27 CDT

Dear Amber users,
                   i have made the prepin file for the organic
molecule in amber7 and i am successful in the MD simulations of
isolated molecule. now i have the problem in making the prepin
file ,topology as well as coordinate files for more than one molecules
like dimer and clusters. could anyone suggest the right path to make
the input files for dimer and clusters of orgaic molecules for MD.

Thanks
Anand

 
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