AMBER Archive (2005)

Subject: Re: AMBER: molecular dynamics course

From: Ilan Samish (ilan.samish_at_weizmann.ac.il)
Date: Sun Jul 10 2005 - 01:23:05 CDT

Hi Vijay,

Above all, see the amber manual: http://amber.scripps.edu/ - the chapter on
force-fields and the last chapter on science background are a good start.

Just gave a structural bioinformatics course that has online material on
force-fields and MD:
http://bioportal.weizmann.ac.il/course/3dbioinfo/syllabus.html
While it is not meant to be self-sufficient, it has a few pointers to
different web sites. Also, hardly included the important topic of
poisson-boltzman theory covered in the amber tutorial and in Helge/Bourne
book (chapter 21).

feedback/error-fixing on our course is more than welcome...

good luck,

ilan

________________________
Ilan.Samish_at_weizmann.ac.il
Plant Sciences Department
Weizmann Institute of Science
Tel: 972 8 934 4300
Fax: 972 8 934 4181
Mobile: 972 52 3321150
http://bioinfo.weizmann.ac.il/~samish/
~~~~~~~~~~~~~~~~~~~~~~~~~~
----- Original Message -----
From: "Vijay Manickam Achari" <vjrajamany_at_yahoo.com>
To: "Amber Scrops" <amber_at_scripps.edu>
Sent: Sunday, July 10, 2005 5:55 AM
Subject: AMBER: molecular dynamics

> Dear all amber users
>
> Can any one know or tell any internet side (web
> address) where we can fine simple and precise
> explanation about molecular dynamics simulation and
> its algorithm other than available famous books?
>
> Thank you
>
> Vijay
>
>
>
>
>
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