AMBER Archive (2005)

Subject: Re: AMBER: parallel error

From: Peter Varnai (pv232_at_cam.ac.uk)
Date: Fri Jul 01 2005 - 10:51:18 CDT

Dear Zhang,

I noticed the same problem back in April, reported it to pathscale,
and the fix will be incorporated in Release 2.2, scheduled for end of
July. The fix is also included in 2.2-beta available for download from
their web site.

I hope this helps,
Peter

On Mon, 27 Jun 2005, Zhang Bing wrote:

> I compiled Amber8 with Pathscale smoothly(Opteron 64bit processors), but
> when I tried to submit a parallel job, error message just appeared like
> this:
>
> nnizb_at_pegasus:~/submit> mpirun -np 4 /gpfs/home/nnizb/amber8/exe/sander
> -O -i rosnpt.in -p ros.prmtop -c rosvmd.rst -o 00001.out &
>
> [2] 21682
>
> nnizb_at_pegasus:~/submit> Warning: Permanently added 'node00' (RSA) to the
> list of known hosts.
>
> Warning: Permanently added 'node01' (RSA) to the list of known hosts.
>
> Warning: Permanently added 'node02' (RSA) to the list of known hosts.
>
>
>
> lib-4014 : UNRECOVERABLE library error
>
> The requested action requires that unit 6 be connected to a file.
>
>
>
> Encountered during an I/O operation on unit 6
>
> Fortran unit 6 is not connected
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