AMBER Archive (2005)

Subject: RE: Re: AMBER:

From: Shan Jufang (jufangshan800_at_hotmail.com)
Date: Sat Jul 09 2005 - 14:37:54 CDT

How do you visualize the trajectory? Do you use VMD? Do you select "crd"
instead of "crdbox" for your trajectory?

Best,
Jufang

----Original Message Follows----
From: <glc0358_at_vip.sina.com>
Reply-To: amber_at_scripps.edu
To: amber_at_scripps.edu
Subject: RE: Re: AMBER:
Date: Sat, 09 Jul 2005 18:37:54 +0800

Dear Zhiguo Liu:
     Thank you for your help! Actually I visualized the trajectory by the
prmtop file which I used for the minimization and MD. Maybe I should run
the minimization for more time?

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