AMBER Archive (2005)

Subject: AMBER: fail of minimization in sander

From: wendy (chenchengwen_at_gmail.com)
Date: Sun Jun 05 2005 - 22:01:25 CDT

Hi, Dear Amber user,

I am a new Amber8 user. I am now use sander to minimize a DNA duplex containg a Pt atom.

I have modified the amber force field parameters to save the ".prmtop", ".inpcrd" file successfully. But when I begin minimization with sander, the output file contain nothing. What is the problem? Is there something wrong with my ".prmtop", ".inpcrd" files?

Thank you very much!

Sincerely,
Wendy

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