AMBER Archive (2005)

Subject: AMBER: interaction between residues

From: Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) (Stefano.Pieraccini_at_unimi.it)
Date: Wed Apr 20 2005 - 09:27:31 CDT

Dear all,

I performed MD calculation with SANDER 7 and now i would like to
calculate the interaction between two residues during the simulation
using the trajectory files.
I wonder if it ispossible to do so with imin=5 and idecomp=4, an how
can I specify the trajectory input file to sander. Maybe I have
misunderstood some sander manual indications, that are rather limited
about this point.

Thank you in advance for any suggestion about the possible solution of
this problem.

Stefano Pieraccini
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