AMBER Archive (2005)

Subject: Re: AMBER: LoadPdb Error: In file [chirality.c], line 121 Message: Atom C67 is not in the first list

From: Ilyas Yildirim (yildirim_at_pas.rochester.edu)
Date: Wed Nov 09 2005 - 21:56:24 CST

Hi Nitin,

I could load the test.pdb file u sent in xleap. I did not get any error. I
am using AMBER 8. Which version of AMBER are u using?

On Wed, 9 Nov 2005, Nitin Bhardwaj wrote:

> Dear All,
> I have created the inpcrd and prmtop files a lipid molecule using
> the antechamber. While doing this I used a single molecule. Everything
> was fine.
> Then I replicated the molecules to create a bilyer. When I load this
> PDB file containing the bilayer, I get the following message:
>
> In file [chirality.c], line 121
> !FATAL: Message: Atom C67 is not in the first list.
> I tried to follow the program "chirality.c" but could not get it.
> Have any of you seen this problem before? Please let me know if anyone
> can suggest a solution to the problem?
> I am attaching a copy of a single lipid if you wanna look at it.
> Rgds,
> Thanks,
> Nitin
> 

-- 
  Ilyas Yildirim
  ---------------------------------------------------------------
  - Department of Chemisty       -				-
  - University of Rochester      -				-
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  - Rochester, NY 14627-0216     - Ph.:(585) 275 67 66 (Office)	-
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