AMBER Archive (2005)

Subject: AMBER: Searching for NAD parameter files / Problems with parameter file creation

From: Daniel Wetzler (danielwetzler_at_appleinfo.de)
Date: Thu Jun 23 2005 - 09:43:29 CDT

Dear AMBERians,

I'm searching for parameter files for NAD.
Since I'm using AMBER7 I have serious problems with
the parameter files at
http://pharmacy.man.ac.uk/amber/.

Does anyone know where to get newer parameter files ?

I also tried to generate parameter files myself using
antchamber. I mannaged to create a file but if I use it,
the NAD appears two times in my model since the NAD
is added a 2nd time as a bunch of heteroatoms.

Does anyone know why this weired thing happens ?

Best regards,

Daniel Wetzler

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