AMBER Archive (2005)

Subject: Re: AMBER: Adding residues to a DNA sequence

From: David A. Case (case_at_scripps.edu)
Date: Wed Jul 27 2005 - 16:31:16 CDT

On Mon, Jul 25, 2005, Kara Di Giorgio wrote:

> How do you suggest superimposing the residues? What program would you
> suggest using? How do I replace the two residues with the longer
> regular helix. I had thought of this but didn't know how to do it.

Well, *I* would use NAB (http://www.scripps.edu/case), but there are lots
of programs that can superimpose parts of molecules on top of one another,
often in a visual fashion (e.g. in VMD) so that you can see immediately if
it did what you want or not.

...dac

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu