AMBER Archive (2005)

Subject: AMBER: leap bond angle building

From: Stern, Julie (jvstern_at_bnl.gov)
Date: Tue Feb 08 2005 - 17:44:39 CST

Hello,
   I'm building a new residue. I do have 3 atoms of a new atom type in
a planar triangle with a 4th atom of a new atom type of top of it. I get
the
following comments in leap. What does this mean? Am I doing something
wrong or unwanted? Thanks.

--Julie

Building proper torsion parameters.
1-4: angle 3 4 duplicates bond ('triangular' bond) or angle ('square' bond)

1-4: angle 3 4 duplicates bond ('triangular' bond) or angle ('square' bond)

1-4: angle 2 3 duplicates bond ('triangular' bond) or angle ('square' bond)
Building improper torsion parameters.
 total 0 improper torsions applied
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