AMBER Archive (2005)

Subject: Re: AMBER: Create new Unit

From: FyD (fyd_at_u-picardie.fr)
Date: Thu Jun 30 2005 - 19:25:02 CDT

> I would like to create a new unit (non-standard unit) containing a
> modified nucleic acid with leap.
> I am trying to proceed as in the tutorial4.
> I load my pdb file into the new unit
> > xxxx = loadpdb xxxx.pdb
> So I would like to determine the head and the tail atoms for my new
> unit. But it seems that leap does not recognize my unit.
> When I chek by the command desc xxxx it gives me that
> UNIT name: xxxx
> Head atom: null
> Tail atom: null
>
> But when I do
> Desc xxxx.1.1 it gives me that
> STRING (with no reference): 'xxxx.1.1'

See
http://www.u-picardie.fr/labo/lbpd/RED/FAQ-II.htm#3

Regards, Francois 

-- 
  F.-Y. Dupradeau
DMAG EA 3901 & Faculte de Pharmacie, Amiens, France
The Scripps Research Institute, La Jolla, CA, USA
       --
http://www.u-picardie.fr/labo/lbpd/FyD.htm
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