AMBER Archive (2005)

Subject: AMBER: FW: Amber installation

From: Eric Mullins (pmullins_at_vt.edu)
Date: Wed Apr 06 2005 - 10:36:20 CDT

During the installation of Amber 8, specifically the "make serial" command,
I will get an error when trying to install the antechamber tool. It will
return the following error:

cd antechamber; make install
make[1]: Entering directory 'usr/local/amber8/src/antechamber'
g++ -c -o bondtype.o bondtype.C
bondtype.C:23:19 vector: No such file or directory
bondtype.C:79: error: 'vector' not declared
bondtype.C:242: error: 'vector' was not declared in this scope
bondtype.C:242: error: parse error before '>' token
...

I am running version 8 on an i586 machine using Redhat Linux v7.3. I have
checked to make sure I have all of the necessary compilers, FORTRAN 90, C,
and C++, and I believe they are all working. I edited the makefile file in
/usr/local/amber8/src to install only tleap because my machine does not
support the graphical interface.

I ran the 'make test' script to see if any of the installation had worked
properly, and all functions passed until it tested 'tleap'. What advice can
you give me to get your software up and running? I would greatly appreciate
it.

g++ --version returns g++ (GCC) 3.3.3 which I believe is greater than your
recommended gcc-2.96 for Redhat 7.3.

Sincerely,

Eric Mullins
Graduate Research Assistant
Department of Chemical Engineering (0211)
Randolph Annex Rm. 205
Virginia Polytechnic Institute and State University
pmullins_at_vt.edu
540-231-3891

>On Tue, Apr 05, 2005, owner-amber_at_scripps.edu wrote:
>
>Hello,
>
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>Sincerely,
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>
>p.s. what does "g++ --version" return? It certainly looks like maybe your
>compiler is so old that it doesn't include the standard template libraries
>that bondtype requires.

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