AMBER Archive (2005)

Subject: Re: AMBER: pdb files from traj file

From: Carlos Simmerling (carlos.simmerling_at_stonybrook.edu)
Date: Wed Jul 13 2005 - 16:16:52 CDT

ptraj will save pdb files for each frame, check the manual.

YoungJin Cho wrote:

> Let me ask very simple question.
>
> Does anybody know how can get a pdb file from traj file?
> Not only the final pdb but also the others: I can see those from vmd
> but I have no idea how I can save them as pdb file. (So my question is
> how we can get pdb files from one traj file)
>
> Thanks in advance,
>
> Young-Jin
>
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-- 
===================================================================
Carlos L. Simmerling, Ph.D.
Associate Professor           Phone: (631) 632-1336
Center for Structural Biology Fax:   (631) 632-1555
Stony Brook University        Web:   http://comp.chem.sunysb.edu/carlos
Stony Brook, NY 11794-5115    E-mail: carlos.simmerling_at_stonybrook.edu
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