AMBER Archive (2005)

Subject: Re: AMBER: problem with addIons

From: David A. Case (case_at_scripps.edu)
Date: Wed Jul 06 2005 - 17:41:21 CDT

On Wed, Jul 06, 2005, Lwin, ThuZar wrote:
>
> Lastly, I downloaded the pdb file from amber8 tutorial 1PLC.inpcrd.pdb this
> pdb also shows ions at one corner.

I can't reproduce this: the ions look fine to me (not all in one corner, but
reasonably distributed around the protein.)

I got the file from here:

 http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_four/index.htm

How are you doing the visualization?

...dac

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