AMBER Archive (2005)

Subject: Re: AMBER: new residue

From: Furse, Kristina Elisabet (kristina.e.furse_at_vanderbilt.edu)
Date: Tue Jul 26 2005 - 20:40:51 CDT

Just a guess, but you might make sure your head and tail atoms are identified
correctly so the proper connections are made. Probably need to give more info on
what weird means...

G'luck,
Kristina

Quoting "Douali, Latifa" <latifa.douali_at_pnl.gov>:

> Dear amber users,
>
>
> I have created a new nucleic acid residue. When I edit my new monomer
> residue in xleap it looks fine. When I try to insert it into a polymer,
> I obtain a weird structure. (I load the polymer by loadpdb command in
> Xleap)
> How can I make nucgen recognise my new residue?
>
> Thank you very much
>
> Latifa
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-----------------------------------------------------------------
Kristina E. Furse
Department of Chemistry
Center for Structural Biology
Vanderbilt University
Email: kristina.e.furse_at_Vanderbilt.Edu
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