AMBER Archive (2005)

Subject: Re: AMBER: coordinates translation

From: Jack Lei (jacklei2002_at_gmail.com)
Date: Sun Apr 24 2005 - 18:51:16 CDT

Hi, Ye:

Is it done in AMBER8? I didnot find the translation of coordinates in AMBER7.
Anyway, it should make no difference. If it is true as you said, it
is difficult to
 make sure if you get a corrected output pdb files compared with original
trajectory file.

Jack

On 4/25/05, Ye MEI <ymei_at_itcc.nju.edu.cn> wrote:
> Dear Amber users，
>
> I am trying to use mm_pbsa to analyze the results md simulations. But I notice that the coordinates of the complex in the intermediate pdb files are translation of real coordinates in md simulation. Why mm_pbsa need translate the coordinates?
>
>
> Ye MEI
> ymei_at_itcc.nju.edu.cn
> 2005-04-25
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