AMBER Archive (2005)

Subject: Re: AMBER: Simple 3D Molecule Visualization

From: Karsten Suhre (karsten.suhre_at_igs.cnrs-mrs.fr)
Date: Tue Oct 18 2005 - 11:45:36 CDT

Hi Sarah,

A comprehensive starting point would be the software list maintained at the
PDB:

http://www.rcsb.org/pdb/software-list.html#Graphics

Personally, I would recommend VMD out of these tools.

http://www.ks.uiuc.edu/Research/vmd/

For the dipole stuff, see:

http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/cpmd-vmd/part3.html#chap5_sect2

Kind regards,

Karsten.

On Tuesday 18 October 2005 18:29, Alec M. Resnick wrote:
> So I figured that if anyone could provide an elegant software
> solution to this problem, AMBER users could. I've been searching for
> a simple program which can be used to create stylized, 3D ball and
> stick models from a set of coordinates (not too large at all).
> Additionally, I'd like to draw in the dipole vector. A high degree
> of customization would be ideal. What options might I have from
> which to choose?
>
> My apologies for the off-AMBER question, please forgive my mailing-
> list etiquette (or lack thereof). Thanks a bunch!
>
> Gratefully,
> a.
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