AMBER Archive (2005)

Subject: Re: AMBER: solvent accessible surface area

From: David A. Case (case_at_scripps.edu)
Date: Tue Apr 19 2005 - 09:43:24 CDT

On Tue, Apr 19, 2005, John wrote:

> I guess Molsurf calculates solvent excluding surface and not accessible
> surface.

This is correct. However, you can easily get molsurf to give you the solvent
accessible surface: Just at 1.4 to each of the atomic radii, and set the
solvent probe radius to zero.

....good luck....dac

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