AMBER Archive (2005)

Subject: Re: AMBER: doble C and N terminal

From: David A. Case (case_at_scripps.edu)
Date: Tue Apr 05 2005 - 16:25:10 CDT

On Tue, Apr 05, 2005, Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) wrote:
>
> but leap seems to be unable to dela with
> the fact that my resulting peptide has two C-terminal and two N-
> terminal A.A.

You will have to be more specific about how you constructed your system.
Be sure to put a "TER" card in your pdb file between the end of one peptide
chain and the beginning of a second one -- that is the signal to LEaP to not
make a bond between the two.

...dac

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