AMBER Archive (2005)

Subject: Re: AMBER: enhanced sampling methods

From: David A. Case (case_at_scripps.edu)
Date: Wed Jan 19 2005 - 14:34:24 CST


On Wed, Jan 19, 2005, Vlad Cojocaru wrote:

> Could somebody recommend me a good review about different enhanced
> sampling methods currently used in addition to standard molecular
> dynamics simulations?
> I am interested in the differences between these methods, their
> applicability, accuracies etc ...

There is a special issue of J. Mol. Graphics and Modeling devoted to this
subject: vol. 22, pp. 317-463 (2004). You might especially want to look
at the paper by Yuko Okamoto, and references therein; also the paper by
Hornak & Simmerling.

...dac

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