AMBER Archive (2005)

Subject: Re: AMBER: align snapshots to a reference

From: Carlos Simmerling (carlos_at_ilion.bio.sunysb.edu)
Date: Tue Mar 29 2005 - 16:15:29 CST

ptraj does this- if that's not what you want, you;ll have to be much
more specific.

Wen Li wrote:

>Hello everyone,
>
>I am wondering if there is a program available for a purpose of aligning
>snapshots along a trajectory to certain residues of a reference
>structure, and write out the coordinates of all aligned snapshots.
>
>Thanks,
>Wen
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