AMBER Archive (2005)

Subject: AMBER: Cyclic peptide

From: arubin_at_unmc.edu
Date: Tue Feb 15 2005 - 15:12:28 CST

Dear AMBER-users,
I would like to carry out MD simulations for cyclic 25-residue peptide by
ABMER 7. We have built reasonable initial coordinates for of this peptide
by SYBYL (TRIPOS Inc.). How can I build the cyclic peptide and close the
termini by the LEaP means?
I would very appreciate if you can help.
Thank you very much for you consideration.

Alexander Rubinstein, Ph.D.
UNMC Eppley Cancer Center
Molecular Modeling Core Facility
_________________________________
University of Nebraska Medical Center
986805 Nebraska Medical Center
Omaha, Nebraska 68198-6805
USA
E-mail: arubin_at_unmc.edu
WWW: http://www.unmc.edu/Eppley
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