AMBER Archive (2008) - May 2008 By DateMost recent messages
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Starting: Thu May 01 2008 - 00:57:35 CDT
Ending: Sat May 31 2008 - 19:02:17 CDT
- Re: AMBER: regarding segfault during energy minimization Anamika Awasthi (Thu May 01 2008 - 00:57:35 CDT)
- Re: AMBER: Cysteine sulphonic acid parameters FyD (Thu May 01 2008 - 07:03:19 CDT)
- AMBER: Discontinuous Constant pH Restarts Neil Bruce (Thu May 01 2008 - 08:41:21 CDT)
- Re: AMBER: Cysteine sulphonic acid parameters Rima Chaudhuri (Thu May 01 2008 - 10:43:48 CDT)
- AMBER: Water residue tracking Steve Seibold (Thu May 01 2008 - 11:19:42 CDT)
- AMBER: Installation problem of AMBER on cluster sudipta sinha (Thu May 01 2008 - 13:16:44 CDT)
- Re: AMBER: Installation problem of AMBER on cluster David A. Case (Thu May 01 2008 - 13:55:17 CDT)
- AMBER: Amber10 installation error juyong Lee (Thu May 01 2008 - 21:28:07 CDT)
- RE: AMBER: Amber10 installation error Ross Walker (Thu May 01 2008 - 23:01:02 CDT)
- Re: AMBER: Amber10 installation error juyong Lee (Thu May 01 2008 - 23:52:10 CDT)
- Re: AMBER: Installation problem of AMBER on cluster sudipta sinha (Fri May 02 2008 - 02:39:09 CDT)
- Re: AMBER: Installation problem of AMBER on cluster Bertrand P. S. Russell (Fri May 02 2008 - 05:11:15 CDT)
- AMBER: test.parallel.QMMM problem Carra, Claudio (JSC-SK)[USRA] (Fri May 02 2008 - 08:37:28 CDT)
- AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 sychen (Fri May 02 2008 - 09:22:50 CDT)
- AMBER: Water tracking Steve Seibold (Fri May 02 2008 - 10:09:35 CDT)
- AMBER: Help with NMODE Seth Lilavivat (Fri May 02 2008 - 10:24:25 CDT)
- RE: AMBER: Amber10 installation error Ross Walker (Fri May 02 2008 - 10:33:43 CDT)
- RE: AMBER: Installation problem of AMBER on cluster Ross Walker (Fri May 02 2008 - 10:41:48 CDT)
- RE: AMBER: test.parallel.QMMM problem Ross Walker (Fri May 02 2008 - 10:50:31 CDT)
- Re: AMBER: Amber10 installation error David A. Case (Fri May 02 2008 - 11:07:50 CDT)
- Re: AMBER: Water tracking Thomas Cheatham III (Fri May 02 2008 - 11:14:21 CDT)
- Re: AMBER: Help with NMODE David A. Case (Fri May 02 2008 - 11:23:34 CDT)
- AMBER: cfortran.h error with xlf90 compiler juyong Lee (Fri May 02 2008 - 11:35:32 CDT)
- Re: AMBER: Help with NMODE Seth Lilavivat (Fri May 02 2008 - 11:50:35 CDT)
- RE: AMBER: cfortran.h error with xlf90 compiler Ross Walker (Fri May 02 2008 - 11:58:27 CDT)
- Re: AMBER: Help with NMODE David A. Case (Fri May 02 2008 - 12:06:33 CDT)
- Re: AMBER: cfortran.h error with xlf90 compiler David A. Case (Fri May 02 2008 - 12:10:54 CDT)
- Re: AMBER: Help with NMODE Seth Lilavivat (Fri May 02 2008 - 13:05:19 CDT)
- AMBER: Compiling amber10 with xlf90 fortran compiler juyong Lee (Fri May 02 2008 - 13:27:10 CDT)
- Re: AMBER: Installation problem of AMBER on cluster sudipta sinha (Fri May 02 2008 - 13:29:37 CDT)
- AMBER: Mn2+ parameters in AMBER jitrayut jitonnom (Fri May 02 2008 - 13:46:25 CDT)
- RE: AMBER: Installation problem of AMBER on cluster Ross Walker (Fri May 02 2008 - 14:07:10 CDT)
- Re: AMBER: Help with NMODE David A. Case (Fri May 02 2008 - 14:28:51 CDT)
- AMBER: Inquiry on B-factor of NMR James Thomas (Fri May 02 2008 - 14:31:09 CDT)
- Re: AMBER: Discontinuous Constant pH Restarts David A. Case (Fri May 02 2008 - 14:44:31 CDT)
- AMBER: printing dipoles in Amber10 (and earlier) Piotr Cieplak (Fri May 02 2008 - 15:29:49 CDT)
- Re: AMBER: Installation problem of AMBER on cluster sudipta sinha (Fri May 02 2008 - 15:29:38 CDT)
- AMBER: point charges Chih-Ying Lin (Fri May 02 2008 - 15:53:50 CDT)
- Re: AMBER: Installation problem of AMBER on cluster Gustavo Seabra (Fri May 02 2008 - 16:16:22 CDT)
- RE: AMBER: printing dipoles in Amber10 (and earlier) Ross Walker (Fri May 02 2008 - 16:16:08 CDT)
- RE: AMBER: Installation problem of AMBER on cluster Ross Walker (Fri May 02 2008 - 16:18:48 CDT)
- RE: AMBER: point charges Ross Walker (Fri May 02 2008 - 16:32:43 CDT)
- RE: AMBER: Installation problem of AMBER on cluster Ross Walker (Fri May 02 2008 - 16:33:48 CDT)
- AMBER: Example .prepi file for nonstandard amino acids finke_at_oakland.edu (Fri May 02 2008 - 17:00:45 CDT)
- Re: RE: AMBER: point charges Chih-Ying Lin (Fri May 02 2008 - 17:42:18 CDT)
- Re: AMBER: Example .prepi file for nonstandard amino acids David A. Case (Fri May 02 2008 - 17:54:03 CDT)
- RE: RE: AMBER: point charges Ross Walker (Fri May 02 2008 - 18:03:08 CDT)
- Re: AMBER: Example .prepi file for nonstandard amino acids finke_at_oakland.edu (Fri May 02 2008 - 20:06:30 CDT)
- Re: RE: RE: AMBER: point charges Chih-Ying Lin (Sat May 03 2008 - 16:47:23 CDT)
- Re: AMBER: Installation problem of AMBER on cluster sudipta sinha (Sat May 03 2008 - 00:59:23 CDT)
- AMBER: about glycam06 WANG,YING (Sat May 03 2008 - 18:22:18 CDT)
- Re: AMBER: about glycam06 David A. Case (Sat May 03 2008 - 18:49:27 CDT)
- Re: AMBER: about glycam06 WANG,YING (Sat May 03 2008 - 18:55:11 CDT)
- Re: AMBER: Installation problem of AMBER on cluster David A. Case (Sat May 03 2008 - 18:56:32 CDT)
- Re: AMBER: about glycam06 WANG,YING (Sat May 03 2008 - 18:57:35 CDT)
- Re: AMBER: about glycam06 David A. Case (Sat May 03 2008 - 19:32:10 CDT)
- Re: RE: RE: AMBER: point charges David A. Case (Sat May 03 2008 - 19:36:08 CDT)
- Re: AMBER: about glycam06 Austin B. Yongye (Sat May 03 2008 - 20:59:47 CDT)
- Re: AMBER: about glycam06 WANG,YING (Sat May 03 2008 - 21:35:05 CDT)
- Re: AMBER: about glycam06 WANG,YING (Sat May 03 2008 - 21:40:14 CDT)
- Re: AMBER: Installation problem of AMBER on cluster sudipta sinha (Sun May 04 2008 - 07:31:22 CDT)
- AMBER: Amber10 Installation error - incorrect file suffix juyong Lee (Sun May 04 2008 - 07:46:10 CDT)
- AMBER: Deriving Force Field Parameters Shultz, Jack (Sun May 04 2008 - 16:32:03 CDT)
- Re: AMBER: Help with NMODE Seth Lilavivat (Sun May 04 2008 - 17:15:53 CDT)
- AMBER: GAFF Schema Shultz, Jack (Sun May 04 2008 - 17:11:37 CDT)
- Re: AMBER: about glycam06 Bill Ross (Sun May 04 2008 - 17:46:05 CDT)
- Re: AMBER: GAFF Schema David A. Case (Sun May 04 2008 - 20:21:59 CDT)
- Re: AMBER: Amber10 Installation error - incorrect file suffix David A. Case (Sun May 04 2008 - 20:20:55 CDT)
- Re: AMBER: Help with NMODE David A. Case (Sun May 04 2008 - 20:26:07 CDT)
- Re: AMBER: Installation problem of AMBER on cluster David A. Case (Sun May 04 2008 - 20:32:02 CDT)
- Re: AMBER: Installation problem of AMBER on cluster Bertrand P. S. Russell (Sun May 04 2008 - 20:50:13 CDT)
- Re: AMBER: Amber10 Installation error - incorrect file suffix juyong Lee (Sun May 04 2008 - 21:01:02 CDT)
- AMBER: Jarzinsky relationship E.M. (Sun May 04 2008 - 21:39:51 CDT)
- Re: AMBER: Installation problem of AMBER on cluster sudipta sinha (Mon May 05 2008 - 01:52:58 CDT)
- Re: AMBER: Installation problem of AMBER on cluster Bertrand P. S. Russell (Mon May 05 2008 - 02:03:39 CDT)
- AMBER: Torsion angle restrains and Jarzinsky E.M. (Mon May 05 2008 - 02:06:56 CDT)
- Re: AMBER: Installation problem of AMBER on cluster Bertrand P. S. Russell (Mon May 05 2008 - 02:09:20 CDT)
- AMBER: Re: amber 9 compilation problem on IBM SP5 Andrew Emerson (Mon May 05 2008 - 02:57:53 CDT)
- AMBER: Installation error on IBM cluster juyong Lee (Mon May 05 2008 - 03:40:59 CDT)
- Re: AMBER: Installation problem of AMBER on cluster sudipta sinha (Mon May 05 2008 - 04:47:38 CDT)
- AMBER: misplacement of TER by leap Jena M (Mon May 05 2008 - 06:00:55 CDT)
- Re: AMBER: Installation problem of AMBER on cluster sudipta sinha (Mon May 05 2008 - 06:24:29 CDT)
- Re: AMBER: Installation problem of AMBER on cluster Bertrand P. S. Russell (Mon May 05 2008 - 07:40:56 CDT)
- Re: AMBER: misplacement of TER by leap Tim Meyer (Mon May 05 2008 - 08:03:54 CDT)
- Re: AMBER: Deriving Force Field Parameters FyD (Mon May 05 2008 - 09:14:22 CDT)
- Re: AMBER: about glycam06 WANG,YING (Mon May 05 2008 - 09:30:19 CDT)
- Re: AMBER: Jarzinsky relationship Adrian Roitberg (Mon May 05 2008 - 09:46:53 CDT)
- Re: AMBER: Jarzinsky relationship E.M. (Mon May 05 2008 - 10:02:49 CDT)
- RE: AMBER: Installation error on IBM cluster Ross Walker (Mon May 05 2008 - 10:06:11 CDT)
- Re: AMBER: Jarzinsky relationship Adrian Roitberg (Mon May 05 2008 - 10:13:51 CDT)
- AMBER: unable to compile AmberTools 1.0 Rabin (Mon May 05 2008 - 12:07:00 CDT)
- AMBER: NON-BONDED parameters Chih-Ying Lin (Mon May 05 2008 - 12:32:23 CDT)
- Re: AMBER: error in compilation elsize.cc Scott Brozell (Mon May 05 2008 - 13:55:49 CDT)
- AMBER: About reading in heme and CO molecule together with myoglobin Yang, Lee-Wei (Mon May 05 2008 - 13:08:53 CDT)
- Re: AMBER: unable to compile AmberTools 1.0 David A. Case (Mon May 05 2008 - 13:14:44 CDT)
- Re: AMBER: NON-BONDED parameters Thomas Steinbrecher (Mon May 05 2008 - 13:14:59 CDT)
- AMBER: AMBER Parallel test error jitrayut jitonnom (Mon May 05 2008 - 13:37:39 CDT)
- Re: AMBER: misplacement of TER by leap David A. Case (Mon May 05 2008 - 13:55:29 CDT)
- Re: AMBER: unable to compile AmberTools 1.0 Yu Chen (Mon May 05 2008 - 14:06:26 CDT)
- Re: AMBER: Help with NMODE Seth Lilavivat (Mon May 05 2008 - 14:39:06 CDT)
- RE: AMBER: AMBER Parallel test error Ross Walker (Mon May 05 2008 - 14:42:09 CDT)
- AMBER: DCCM correlation analysis Ibrahim Moustafa (Mon May 05 2008 - 15:21:37 CDT)
- Re: AMBER: NON-BONDED parameters Chih-Ying Lin (Mon May 05 2008 - 17:10:05 CDT)
- AMBER: Units, units units E.M. (Mon May 05 2008 - 17:18:37 CDT)
- Re: AMBER: Units, units units David A. Case (Mon May 05 2008 - 18:02:57 CDT)
- Re: AMBER: About reading in heme and CO molecule together with myoglobin David A. Case (Mon May 05 2008 - 18:51:44 CDT)
- Re: AMBER: NON-BONDED parameters David A. Case (Mon May 05 2008 - 18:54:32 CDT)
- AMBER: Minimization in Octahedric Box guardiani_at_fi.infn.it (Tue May 06 2008 - 06:31:50 CDT)
- Re: AMBER: AMBER Parallel test error jitrayut jitonnom (Tue May 06 2008 - 08:09:10 CDT)
- Re: AMBER: AMBER Parallel test error jitrayut jitonnom (Tue May 06 2008 - 08:38:53 CDT)
- AMBER: rmsd per residue Furia Gargano (Tue May 06 2008 - 09:28:59 CDT)
- RE: AMBER: AMBER Parallel test error Ross Walker (Tue May 06 2008 - 10:25:46 CDT)
- AMBER: steered MD initial state M. L. Dodson (Tue May 06 2008 - 11:04:09 CDT)
- Re: AMBER: steered MD initial state Gustavo Seabra (Tue May 06 2008 - 11:37:54 CDT)
- Re: AMBER: steered MD initial state Adrian Roitberg (Tue May 06 2008 - 12:16:52 CDT)
- Re: AMBER: steered MD initial state M. L. Dodson (Tue May 06 2008 - 12:27:03 CDT)
- Re: AMBER: Minimization in Octahedric Box David A. Case (Tue May 06 2008 - 12:28:20 CDT)
- RE: AMBER: Minimization in Octahedric Box Ross Walker (Tue May 06 2008 - 12:22:39 CDT)
- Re: AMBER: steered MD initial state M. L. Dodson (Tue May 06 2008 - 12:39:04 CDT)
- AMBER: mm_pbsa.pl not reading parameters for nmode Seth Lilavivat (Tue May 06 2008 - 12:50:18 CDT)
- Re: AMBER: mm_pbsa.pl not reading parameters for nmode David A. Case (Tue May 06 2008 - 13:13:54 CDT)
- AMBER: Improper dihedral parameters Chih-Ying Lin (Tue May 06 2008 - 14:00:36 CDT)
- Re: AMBER: Improper dihedral parameters Bill Ross (Tue May 06 2008 - 14:23:55 CDT)
- Re: AMBER: Improper dihedral parameters Da-Wei Li (Tue May 06 2008 - 14:30:29 CDT)
- AMBER: DFTB parameters for O-P Carra, Claudio (JSC-SK)[USRA] (Tue May 06 2008 - 15:01:55 CDT)
- AMBER: single stranded DNA Taufik Al-Sarraj (Tue May 06 2008 - 17:37:41 CDT)
- Re: AMBER: single stranded DNA David A. Case (Tue May 06 2008 - 17:41:29 CDT)
- Re: AMBER: single stranded DNA Taufik Al-Sarraj (Tue May 06 2008 - 19:11:07 CDT)
- AMBER: Amber Parameter Schema Shultz, Jack (Tue May 06 2008 - 19:22:02 CDT)
- AMBER: Ewald error estimate 欧阳德方 (Wed May 07 2008 - 03:25:22 CDT)
- AMBER: molsurf jacopo.sgrignani_at_unifi.it (Wed May 07 2008 - 06:11:34 CDT)
- Re: AMBER: Ewald error estimate David A. Case (Wed May 07 2008 - 10:57:03 CDT)
- AMBER: uninstall of AMBER sudipta sinha (Wed May 07 2008 - 10:50:37 CDT)
- Re: AMBER: uninstall of AMBER David A. Case (Wed May 07 2008 - 11:07:25 CDT)
- Re: AMBER: AMBER Parallel test error sudipta sinha (Wed May 07 2008 - 11:09:28 CDT)
- RE: AMBER: uninstall of AMBER Ross Walker (Wed May 07 2008 - 12:05:20 CDT)
- AMBER: nmode: number of atoms limitation Qi Yan (Wed May 07 2008 - 13:25:58 CDT)
- AMBER: GBSA SA calculation Titus, Jamie \(bairdje\) (Wed May 07 2008 - 13:32:43 CDT)
- AMBER: Hydroxyprolines!!! Titus, Jamie \(bairdje\) (Wed May 07 2008 - 13:54:03 CDT)
- Re: AMBER: GBSA SA calculation Carlos Simmerling (Wed May 07 2008 - 14:05:44 CDT)
- Re: AMBER: DFTB parameters for O-P Gustavo Seabra (Wed May 07 2008 - 14:19:50 CDT)
- AMBER: Harmonic Force Constant Shultz, Jack (Wed May 07 2008 - 14:32:18 CDT)
- AMBER: How to transfer unformatted coordinates into formatted ones Qi Yan (Wed May 07 2008 - 14:44:10 CDT)
- Re: AMBER: Discontinuous Constant pH Restarts Neil Bruce (Wed May 07 2008 - 15:21:28 CDT)
- Re: AMBER: GBSA SA calculation David A. Case (Wed May 07 2008 - 16:17:07 CDT)
- RE: AMBER: nmode: number of atoms limitation Ross Walker (Wed May 07 2008 - 16:39:44 CDT)
- Re: AMBER: Discontinuous Constant pH Restarts David A. Case (Wed May 07 2008 - 16:34:23 CDT)
- AMBER: Azobenzene: AMBER+Gromos Force Field parameters Chih-Ying Lin (Wed May 07 2008 - 16:43:17 CDT)
- Re: AMBER: GBSA SA calculation Carlos Simmerling (Wed May 07 2008 - 17:05:26 CDT)
- AMBER: nmode: number of atoms limitation Qi Yan (Wed May 07 2008 - 13:10:48 CDT)
- Re: AMBER: How to transfer unformatted coordinates into formatted ones David A. Case (Wed May 07 2008 - 20:14:04 CDT)
- Re: AMBER: Hydroxyprolines!!! David A. Case (Wed May 07 2008 - 20:26:16 CDT)
- AMBER: xleap (draw using edit) Taufik Al-Sarraj (Wed May 07 2008 - 21:31:14 CDT)
- RE: AMBER: How to transfer unformatted coordinates into formatted ones Qi Yan (Wed May 07 2008 - 21:55:18 CDT)
- RE: AMBER: Ewald error estimate Å·ÑôµÂ·½ (Wed May 07 2008 - 22:38:18 CDT)
- RE: AMBER: Ewald error estimate Thomas Cheatham (Wed May 07 2008 - 22:51:55 CDT)
- AMBER: reset time and comments E.M. (Wed May 07 2008 - 23:13:02 CDT)
- RE: AMBER: Ewald error estimate Å·ÑôµÂ·½ (Thu May 08 2008 - 00:04:05 CDT)
- Re: AMBER: reset time and comments Benjamin Juhl (Thu May 08 2008 - 04:12:11 CDT)
- Re: AMBER: AMBER Parallel test error jitrayut jitonnom (Thu May 08 2008 - 04:10:49 CDT)
- Re: AMBER: Jarzinsky relationship E.M. (Thu May 08 2008 - 05:58:10 CDT)
- Re: AMBER: Discontinuous Constant pH Restarts Smriti Sharma (Thu May 08 2008 - 06:05:31 CDT)
- AMBER: Compilation of PMEMD sudipta sinha (Thu May 08 2008 - 06:07:28 CDT)
- AMBER: mm_pbsa problem: bad atom type: IP mori_at_cerm.unifi.it (Thu May 08 2008 - 06:59:12 CDT)
- Re: AMBER: Compilation of PMEMD Robert Duke (Thu May 08 2008 - 07:17:43 CDT)
- AMBER: nmode "Atom out of bounds" for min of multiple ligands Seth Lilavivat (Thu May 08 2008 - 09:30:24 CDT)
- RE: AMBER: reset time and comments Ross Walker (Thu May 08 2008 - 10:24:50 CDT)
- RE: AMBER: Ewald error estimate Ross Walker (Thu May 08 2008 - 10:27:15 CDT)
- AMBER: can amber read .xyz files? WANG,YING (Thu May 08 2008 - 10:29:57 CDT)
- Re: AMBER: How to transfer unformatted coordinates into formatted ones David A. Case (Thu May 08 2008 - 12:13:59 CDT)
- Re: AMBER: Ewald error estimate David A. Case (Thu May 08 2008 - 12:16:43 CDT)
- AMBER: velocity autocorrelation function for SPC felxible water model Rahaman, Asif (Thu May 08 2008 - 12:07:41 CDT)
- RE: AMBER: Ewald error estimate Thomas Cheatham III (Thu May 08 2008 - 12:21:38 CDT)
- RE: AMBER: nmode "Atom out of bounds" for min of multiple ligands Ross Walker (Thu May 08 2008 - 12:19:34 CDT)
- RE: AMBER: can amber read .xyz files? Ross Walker (Thu May 08 2008 - 12:23:16 CDT)
- Re: AMBER: mm_pbsa problem: bad atom type: IP David A. Case (Thu May 08 2008 - 12:27:22 CDT)
- Re: AMBER: Discontinuous Constant pH Restarts David A. Case (Thu May 08 2008 - 12:21:57 CDT)
- Re: AMBER: xleap (draw using edit) David A. Case (Thu May 08 2008 - 13:02:58 CDT)
- Re: AMBER: velocity autocorrelation function for SPC felxible water model David A. Case (Thu May 08 2008 - 13:00:28 CDT)
- AMBER: AmberTools on OS X fails tests Hans Martin Senn (Thu May 08 2008 - 13:59:12 CDT)
- Re: AMBER: AmberTools on OS X fails tests Wei Zhang (Thu May 08 2008 - 14:15:46 CDT)
- Re: AMBER: AmberTools on OS X fails tests David A. Case (Thu May 08 2008 - 14:30:53 CDT)
- Re: AMBER: xleap (draw using edit) Taufik Al-Sarraj (Thu May 08 2008 - 15:58:24 CDT)
- Re: AMBER: nmode "Atom out of bounds" for min of multiple ligands Seth Lilavivat (Thu May 08 2008 - 15:01:45 CDT)
- RE: AMBER: Harmonic Force Constant Shultz, Jack (Thu May 08 2008 - 15:21:00 CDT)
- RE: AMBER: velocity autocorrelation function for SPC felxible water model Rahaman, Asif (Thu May 08 2008 - 15:42:22 CDT)
- Re: AMBER: nmode "Atom out of bounds" for min of multiple ligands David A. Case (Thu May 08 2008 - 15:49:31 CDT)
- Re: AMBER: Jarzinsky relationship David Mobley (Thu May 08 2008 - 16:29:29 CDT)
- Re: AMBER: velocity autocorrelation function for SPC felxible water model David A. Case (Thu May 08 2008 - 17:54:57 CDT)
- AMBER: Adjust Force Field parameters Chih-Ying Lin (Thu May 08 2008 - 18:46:21 CDT)
- AMBER: QM/MM Syed Tarique Moin (Fri May 09 2008 - 03:28:06 CDT)
- AMBER: drawing repeated units Taufik Al-Sarraj (Fri May 09 2008 - 10:10:19 CDT)
- Re: AMBER: QM/MM Gustavo Seabra (Fri May 09 2008 - 09:18:21 CDT)
- AMBER: distance Urszula Uciechowska (Fri May 09 2008 - 09:36:18 CDT)
- Re: AMBER: distance E.M. (Fri May 09 2008 - 09:43:12 CDT)
- AMBER: help to install AMBER9 Jeffrey (Fri May 09 2008 - 09:47:16 CDT)
- Re: AMBER: distance Ibrahim Moustafa (Fri May 09 2008 - 09:49:37 CDT)
- Re: AMBER: help to install AMBER9 Ye Mei (Fri May 09 2008 - 09:55:56 CDT)
- Re: AMBER: help to install AMBER9 Gustavo Seabra (Fri May 09 2008 - 10:01:04 CDT)
- AMBER: MM_PBSA output file Qi Yan (Fri May 09 2008 - 11:03:38 CDT)
- RE: AMBER: help to install AMBER9 Ross Walker (Fri May 09 2008 - 11:12:53 CDT)
- AMBER: Prepgen does not give correct result? Rajendra P. OJHA (Fri May 09 2008 - 11:13:58 CDT)
- RE: AMBER: drawing repeated units Ross Walker (Fri May 09 2008 - 11:03:28 CDT)
- Re: AMBER: MM_PBSA output file Navnit Kumar Mishra (Fri May 09 2008 - 11:21:17 CDT)
- Re: AMBER: MM_PBSA output file Alessandro Nascimento (Fri May 09 2008 - 11:22:35 CDT)
- Re: AMBER: drawing repeated units Taufik Al-Sarraj (Fri May 09 2008 - 13:10:56 CDT)
- AMBER: neutral C-terminus and N-terminus parameters for amber Lisa Perez (Fri May 09 2008 - 12:32:13 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao (Fri May 09 2008 - 15:05:39 CDT)
- AMBER: cannot read big .pdb files WANG,YING (Fri May 09 2008 - 21:00:29 CDT)
- Re: AMBER: neutral C-terminus and N-terminus parameters for amber FyD (Sat May 10 2008 - 02:52:10 CDT)
- AMBER: parmbsc0 parameters for RNA.DNA systems Cenk \(Jenk\) Andac (Sat May 10 2008 - 08:47:50 CDT)
- Re: AMBER: parmbsc0 parameters for RNA.DNA systems David A. Case (Sat May 10 2008 - 10:27:36 CDT)
- Re: AMBER: cannot read big .pdb files David A. Case (Sat May 10 2008 - 10:24:41 CDT)
- Re: AMBER: cannot read big .pdb files Lynn F. Ten Eyck (Sat May 10 2008 - 11:37:02 CDT)
- AMBER: Calculate number of ions Dong Xu (Sat May 10 2008 - 13:32:01 CDT)
- Re: AMBER: help to install AMBER9 Jeffrey (Sun May 11 2008 - 04:12:18 CDT)
- Re: AMBER: cannot read big .pdb files WANG,YING (Sun May 11 2008 - 08:38:41 CDT)
- Re: AMBER: cannot read big .pdb files WANG,YING (Sun May 11 2008 - 08:36:48 CDT)
- AMBER: Solvent mixture box Francesco Pietra (Sun May 11 2008 - 12:04:52 CDT)
- AMBER: Ewald PARAMETER RANGE WRONG WANG,YING (Sun May 11 2008 - 13:01:09 CDT)
- AMBER: rms Urszula Uciechowska (Mon May 12 2008 - 06:19:41 CDT)
- Re: AMBER: rms Vlad Cojocaru (Mon May 12 2008 - 07:40:46 CDT)
- Re: AMBER: rms Urszula Uciechowska (Mon May 12 2008 - 08:41:06 CDT)
- Re: AMBER: rms Cenk \(Jenk\) Andac (Mon May 12 2008 - 08:51:56 CDT)
- Re: AMBER: cannot read big .pdb files Wei Zhang (Mon May 12 2008 - 09:34:40 CDT)
- Re: AMBER: cannot read big .pdb files WANG,YING (Mon May 12 2008 - 09:37:24 CDT)
- Re: AMBER: help to install AMBER9 Gustavo Seabra (Mon May 12 2008 - 09:56:41 CDT)
- AMBER: to unsubscribe email Rabin (Mon May 12 2008 - 10:47:43 CDT)
- Re: AMBER: Ewald PARAMETER RANGE WRONG David A. Case (Mon May 12 2008 - 11:00:44 CDT)
- AMBER: About Hydrophobic Interactions. cgji (Mon May 12 2008 - 11:14:00 CDT)
- Re: AMBER: Ewald PARAMETER RANGE WRONG WANG,YING (Mon May 12 2008 - 12:06:03 CDT)
- Re: AMBER: to unsubscribe email Bill Ross (Mon May 12 2008 - 12:46:24 CDT)
- AMBER: Problems installing Amber Tools for Amber 10 Sam Danziger (Mon May 12 2008 - 13:20:23 CDT)
- Re: AMBER: cannot read big .pdb files WANG,YING (Mon May 12 2008 - 14:42:27 CDT)
- Re: AMBER: to unsubscribe email Rabin (Mon May 12 2008 - 16:29:56 CDT)
- AMBER: Ligand energy minimization Dong Xu (Mon May 12 2008 - 17:07:31 CDT)
- Re: AMBER: cannot read big .pdb files David Watson (Mon May 12 2008 - 18:32:49 CDT)
- AMBER: nab Rabin (Mon May 12 2008 - 19:40:54 CDT)
- Re: Re: AMBER: help to install AMBER9 Jeffrey (Mon May 12 2008 - 19:51:46 CDT)
- Re: AMBER: nab Alessandro Nascimento (Mon May 12 2008 - 19:59:27 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Dong Xu (Mon May 12 2008 - 23:09:11 CDT)
- Re: AMBER: Calculate number of ions Mathy Froeyen (Tue May 13 2008 - 02:50:29 CDT)
- Re: AMBER: nab Andreas Svrcek-Seiler (Tue May 13 2008 - 04:39:19 CDT)
- AMBER: from Gromax to AMBER Cristina Sisu (Tue May 13 2008 - 05:00:24 CDT)
- AMBER: An enquiry about dynamic simulations of oxygen binding to myoglobin (Ann N Y Acad Sci. 1986;482:222- Catein Catherine (Tue May 13 2008 - 05:17:29 CDT)
- RE: AMBER: from Gromax to AMBER jacopo.sgrignani_at_unifi.it (Tue May 13 2008 - 08:19:19 CDT)
- Re: AMBER: nab Rabin (Tue May 13 2008 - 08:17:51 CDT)
- AMBER: building quadruplex with nab Rabin (Tue May 13 2008 - 08:38:15 CDT)
- Re: AMBER: cannot read big .pdb files WANG,YING (Tue May 13 2008 - 08:40:34 CDT)
- AMBER: CAVITY_SURFTEN & CAVITY_OFFSET default params Marcin Krol (Tue May 13 2008 - 08:44:48 CDT)
- Re: AMBER: from Gromax to AMBER Cristina Sisu (Tue May 13 2008 - 08:49:12 CDT)
- AMBER: periodic boundary condition WANG,YING (Tue May 13 2008 - 08:55:00 CDT)
- RE: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Ross Walker (Tue May 13 2008 - 10:08:08 CDT)
- RE: AMBER: Ligand energy minimization Ross Walker (Tue May 13 2008 - 10:14:53 CDT)
- AMBER: Free Energy Calculations - parameters for MM Seth Lilavivat (Tue May 13 2008 - 11:29:23 CDT)
- AMBER: initial velocities of MD Jena M (Tue May 13 2008 - 11:37:31 CDT)
- AMBER: divcon E.M. (Tue May 13 2008 - 11:58:49 CDT)
- Re: AMBER: initial velocities of MD Carlos Simmerling (Tue May 13 2008 - 11:59:26 CDT)
- RE: AMBER: initial velocities of MD Ross Walker (Tue May 13 2008 - 12:05:05 CDT)
- Re: AMBER: divcon Gustavo Seabra (Tue May 13 2008 - 12:43:35 CDT)
- Re: AMBER: GBSA SA calculation Carlos Simmerling (Tue May 13 2008 - 12:46:30 CDT)
- AMBER: Amber10 testing problem Cenk \(Jenk\) Andac (Tue May 13 2008 - 14:46:02 CDT)
- RE: AMBER: Amber10 testing problem Ross Walker (Tue May 13 2008 - 16:20:53 CDT)
- AMBER: simulating the pull out of Carbon Nanotube from polymer with AMBER yuan li (Tue May 13 2008 - 21:53:10 CDT)
- Re: AMBER: Calculate number of ions Ruchi Sachdeva (Wed May 14 2008 - 02:24:08 CDT)
- RE: AMBER: Amber10 testing problem Cenk \(Jenk\) Andac (Wed May 14 2008 - 04:13:13 CDT)
- AMBER: AMBER PBSA Thomas Leonard (Wed May 14 2008 - 04:35:54 CDT)
- AMBER: Prepgen Rajendra P. OJHA (Wed May 14 2008 - 04:45:47 CDT)
- Re: AMBER: periodic boundary condition David A. Case (Wed May 14 2008 - 08:50:40 CDT)
- Re: AMBER: rms Vlad Cojocaru (Wed May 14 2008 - 09:01:17 CDT)
- AMBER: MM_PBSA problem in binding_energy mori_at_cerm.unifi.it (Wed May 14 2008 - 09:17:40 CDT)
- AMBER: about addles:¡°forrtl: severe (71): integer divide by zero¡±. ³ÉÈ« (Wed May 14 2008 - 09:57:25 CDT)
- AMBER: RE: AMBER: about addles:¡°forrtl: severe (71): integer divide by zero¡±. Ross Walker (Wed May 14 2008 - 11:30:51 CDT)
- Re: AMBER: MM_PBSA problem in binding_energy jacopo sgrignani (Wed May 14 2008 - 13:43:55 CDT)
- AMBER: subscribe amber wangluohuaxue (Wed May 14 2008 - 09:40:04 CDT)
- AMBER: simulate dipole moment Qiuting Hong (Wed May 14 2008 - 15:52:33 CDT)
- Re: AMBER: simulate dipole moment Neelanjana Sengupta (Wed May 14 2008 - 16:14:54 CDT)
- RE: AMBER: simulate dipole moment Ross Walker (Wed May 14 2008 - 16:25:33 CDT)
- AMBER: AMBER entropy calculation Thomas Leonard (Wed May 14 2008 - 18:00:45 CDT)
- AMBER: RE: AMBER: RE: AMBER: about addles:¡°forrtl: severe (71): integer divide by zero¡±. ³ÉÈ« (Wed May 14 2008 - 19:18:05 CDT)
- Re: AMBER: AMBER entropy calculation Dong Xu (Wed May 14 2008 - 19:37:27 CDT)
- Re: AMBER: AMBER entropy calculation Swarup Gupta (Wed May 14 2008 - 21:20:07 CDT)
- AMBER: Amber10:Compiling with gcc 2.4.1 yongleli (Thu May 15 2008 - 10:36:29 CDT)
- Re: AMBER: Prepgen Junmei Wang (Thu May 15 2008 - 10:46:34 CDT)
- Re: Re: AMBER: Prepgen yongleli (Thu May 15 2008 - 11:18:31 CDT)
- AMBER: Points on a Sphere Justine Condo (Thu May 15 2008 - 11:27:06 CDT)
- AMBER: RE: AMBER: RE: AMBER: RE: AMBER: about addles:¡°forrtl: severe (71): integer divide by zero¡±. Ross Walker (Thu May 15 2008 - 12:37:22 CDT)
- AMBER: MKL libraries/Amber10 Francesco Pietra (Thu May 15 2008 - 13:01:34 CDT)
- AMBER: RESP and Jaguar Seth Lilavivat (Thu May 15 2008 - 15:52:35 CDT)
- AMBER: solvatebox error WANG,YING (Thu May 15 2008 - 16:47:06 CDT)
- RE: AMBER: solvatebox error Ross Walker (Thu May 15 2008 - 16:54:08 CDT)
- RE: AMBER: solvatebox error WANG,YING (Thu May 15 2008 - 17:16:17 CDT)
- Re: AMBER: Amber10:Compiling with gcc 2.4.1 Gustavo Seabra (Thu May 15 2008 - 17:58:05 CDT)
- Re: AMBER: MKL libraries/Amber10 Gustavo Seabra (Thu May 15 2008 - 18:02:42 CDT)
- Re: AMBER: MKL libraries/Amber10 yongleli (Thu May 15 2008 - 21:03:57 CDT)
- RE: AMBER: MKL libraries/Amber10 Ross Walker (Thu May 15 2008 - 21:59:16 CDT)
- Re: AMBER: Amber10:Compiling with gcc 2.4.1 David A. Case (Thu May 15 2008 - 22:42:31 CDT)
- AMBER: reading PDB trajectory Mark Abraham (Thu May 15 2008 - 22:49:55 CDT)
- Re: AMBER: Problems installing Amber Tools for Amber 10 David A. Case (Thu May 15 2008 - 23:47:19 CDT)
- Re: Re: AMBER: Amber10:Compiling with gcc 2.4.1 yongleli (Thu May 15 2008 - 23:03:41 CDT)
- AMBER: RE: AMBER: RE: AMBER: RE: AMBER: RE: AMBER: about addles:¡°forrtl: severe (71): integer divide by z ³ÉÈ« (Fri May 16 2008 - 01:56:34 CDT)
- AMBER: PGI amber9 problems Lorenzo Gontrani (Fri May 16 2008 - 04:52:21 CDT)
- AMBER: RESP charges of an unusual substrate Jiayun Pang (Fri May 16 2008 - 05:45:54 CDT)
- Re: AMBER: PGI amber9 problems David A. Case (Fri May 16 2008 - 06:29:06 CDT)
- Re: AMBER: PGI amber9 problems Lorenzo Gontrani (Fri May 16 2008 - 07:02:53 CDT)
- AMBER: Weighting factors in RESP charge fitting Anselm Horn (Fri May 16 2008 - 07:32:22 CDT)
- Re: AMBER: Problems installing Amber Tools for Amber 10 Lynn F. Ten Eyck (Fri May 16 2008 - 10:12:49 CDT)
- AMBER: STEERED MD fatima.chami_at_durham.ac.uk (Fri May 16 2008 - 11:25:55 CDT)
- RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Fri May 16 2008 - 11:31:17 CDT)
- Re: Re: AMBER: Amber10:Compiling with gcc 2.4.1 yongleli (Thu May 15 2008 - 21:40:51 CDT)
- Re: AMBER: Problems installing Amber Tools for Amber 10 Sam Danziger (Fri May 16 2008 - 12:06:05 CDT)
- Re: AMBER: STEERED MD Robert Duke (Fri May 16 2008 - 12:15:40 CDT)
- Re: AMBER: STEERED MD Robert Duke (Fri May 16 2008 - 12:29:29 CDT)
- Re: AMBER: Problems installing Amber Tools for Amber 10 Sam Danziger (Fri May 16 2008 - 12:41:31 CDT)
- AMBER: about addles:¡°forrtl: severe (71): integer divide by z Ross Walker (Fri May 16 2008 - 13:00:34 CDT)
- RE: AMBER: PGI amber9 problems Ross Walker (Fri May 16 2008 - 13:06:14 CDT)
- RE: AMBER: MKL libraries/Amber10 Ross Walker (Fri May 16 2008 - 13:25:36 CDT)
- Re: AMBER: Problems installing Amber Tools for Amber 10 Sam Danziger (Fri May 16 2008 - 13:29:32 CDT)
- Re: AMBER: Weighting factors in RESP charge fitting Piotr Cieplak (Fri May 16 2008 - 13:46:51 CDT)
- Re: Re: AMBER: Amber10:Compiling with gcc 2.4.1 David A. Case (Fri May 16 2008 - 15:16:56 CDT)
- Re: AMBER: Problems installing Amber Tools for Amber 10 David A. Case (Fri May 16 2008 - 15:24:08 CDT)
- Re: AMBER: MKL libraries/Amber10 David A. Case (Fri May 16 2008 - 15:27:40 CDT)
- Re: AMBER: MKL libraries/Amber10 Thomas Patko (Fri May 16 2008 - 16:26:33 CDT)
- AMBER: build proline Qiuting Hong (Fri May 16 2008 - 16:32:47 CDT)
- AMBER: Versions of mopac David A. Case (Fri May 16 2008 - 21:04:10 CDT)
- Re: AMBER: STEERED MD fatima.chami_at_durham.ac.uk (Sat May 17 2008 - 05:26:28 CDT)
- Re: AMBER: STEERED MD Robert Duke (Sat May 17 2008 - 08:21:10 CDT)
- RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Sat May 17 2008 - 12:12:06 CDT)
- Fw: RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Sat May 17 2008 - 12:33:10 CDT)
- Fw: RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Sat May 17 2008 - 16:14:18 CDT)
- AMBER: Amber 10 ambpdb bug? Sam Danziger (Sat May 17 2008 - 21:17:44 CDT)
- Re: AMBER: Amber 10 ambpdb bug? David A. Case (Sat May 17 2008 - 23:37:09 CDT)
- Fw: RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Sun May 18 2008 - 12:33:54 CDT)
- Re: AMBER: An enquiry about dynamic simulations of oxygen binding to myoglobin (Ann N Y Acad Sci. 1986;482:222- David A. Case (Sun May 18 2008 - 15:09:00 CDT)
- Re: AMBER: Amber 10 ambpdb bug? Sam Danziger (Sun May 18 2008 - 22:41:43 CDT)
- Re: AMBER: RESP charges of an unusual substrate FyD (Mon May 19 2008 - 01:46:40 CDT)
- AMBER: ambertools: static linking of user binaries is not supported on Mac OS X Alan (Mon May 19 2008 - 04:39:32 CDT)
- Re: AMBER: ambertools: static linking of user binaries is not supported on Mac OS X Hans Martin Senn (Mon May 19 2008 - 05:35:24 CDT)
- AMBER: parameters in ff03 and ff99 Peter Kiss (Mon May 19 2008 - 06:21:21 CDT)
- AMBER: Hybrid REMD amber10 Geoff Wood (Mon May 19 2008 - 07:41:54 CDT)
- AMBER: anal Marina Grabar (Mon May 19 2008 - 08:30:13 CDT)
- Re: Fw: RE: AMBER: MKL libraries/Amber10 Gustavo Seabra (Mon May 19 2008 - 09:18:07 CDT)
- AMBER: nfft1-3 too large WANG,YING (Mon May 19 2008 - 09:46:51 CDT)
- AMBER: gasteiger is not working with ambertools 1.0 Alan (Mon May 19 2008 - 09:51:05 CDT)
- AMBER: nfft1-3 too large WANG,YING (Mon May 19 2008 - 09:46:51 CDT)
- Re: Fw: RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Mon May 19 2008 - 10:24:43 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Ross Walker (Mon May 19 2008 - 10:41:59 CDT)
- RE: AMBER: Hybrid REMD amber10 Ross Walker (Mon May 19 2008 - 10:51:13 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Mon May 19 2008 - 11:48:21 CDT)
- AMBER: atom type in glycam06 tinni sona (Mon May 19 2008 - 12:06:57 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Ross Walker (Mon May 19 2008 - 12:19:37 CDT)
- AMBER: bye frustrated modeller (Mon May 19 2008 - 13:29:40 CDT)
- AMBER: analysis REMD rebeca (Mon May 19 2008 - 13:41:15 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Mon May 19 2008 - 15:40:37 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Mon May 19 2008 - 16:17:25 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Mon May 19 2008 - 16:18:11 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Ross Walker (Mon May 19 2008 - 16:25:45 CDT)
- AMBER: 3rd Annual CMM Workshop on QM/MM Simulations Ross Walker (Mon May 19 2008 - 18:33:55 CDT)
- AMBER: MM-PBSA for carbohydrates Neha Gandhi (Mon May 19 2008 - 21:07:24 CDT)
- AMBER: how to calculate delta G from IC50 Thomas Leonard (Tue May 20 2008 - 00:12:04 CDT)
- Re: AMBER: analysis REMD Carlos Simmerling (Tue May 20 2008 - 01:51:22 CDT)
- Re: AMBER: Hybrid REMD amber10 Carlos Simmerling (Tue May 20 2008 - 01:55:06 CDT)
- AMBER: massively parallel computation Mingfeng Yang (Tue May 20 2008 - 02:03:51 CDT)
- Re: AMBER: anal David A. Case (Tue May 20 2008 - 03:25:13 CDT)
- Re: AMBER: anal Marina Grabar (Tue May 20 2008 - 04:20:04 CDT)
- Re: AMBER: analysis REMD rebeca_at_mmb.pcb.ub.es (Tue May 20 2008 - 05:49:00 CDT)
- Re: AMBER: MM-PBSA for carbohydrates Navnit Kumar Mishra (Tue May 20 2008 - 06:25:20 CDT)
- Re: AMBER: analysis REMD Carlos Simmerling (Tue May 20 2008 - 07:11:29 CDT)
- Re: AMBER: how to calculate delta G from IC50 Chris Moth (Tue May 20 2008 - 07:30:29 CDT)
- Re: AMBER: massively parallel computation Adrian Roitberg (Tue May 20 2008 - 09:11:46 CDT)
- Re: AMBER: bye Sara Alexandra Moura (Tue May 20 2008 - 09:14:51 CDT)
- Re: AMBER: massively parallel computation Robert Duke (Tue May 20 2008 - 09:22:56 CDT)
- Re: AMBER: Hybrid REMD amber10 Geoff Wood (Tue May 20 2008 - 09:24:11 CDT)
- Re: AMBER: massively parallel computation Lars Skjærven (Tue May 20 2008 - 09:28:24 CDT)
- Re: AMBER: massively parallel computation Robert Duke (Tue May 20 2008 - 09:32:22 CDT)
- Re: AMBER: massively parallel computation Robert Duke (Tue May 20 2008 - 09:46:34 CDT)
- Re: AMBER: massively parallel computation Mingfeng Yang (Tue May 20 2008 - 11:58:56 CDT)
- Re: AMBER: analysis REMD rebeca_at_mmb.pcb.ub.es (Tue May 20 2008 - 13:31:30 CDT)
- Re: AMBER: analysis REMD Adrian Roitberg (Tue May 20 2008 - 14:17:39 CDT)
- Re: AMBER: building quadruplex with nab Rabin (Tue May 20 2008 - 17:30:17 CDT)
- AMBER: xLeap compilation issues Sasha Buzko (Tue May 20 2008 - 18:41:49 CDT)
- AMBER: How to set a ZN atom radius for PB calculations Sam Danziger (Tue May 20 2008 - 19:23:30 CDT)
- Re: AMBER: building quadruplex with nab David A. Case (Wed May 21 2008 - 00:08:10 CDT)
- Re: AMBER: xLeap compilation issues David A. Case (Wed May 21 2008 - 00:27:53 CDT)
- AMBER: Regarding binding free energy calculation using MM_PBSA method nag raj (Wed May 21 2008 - 02:01:14 CDT)
- Re: AMBER: massively parallel computation Atro Tossavainen (Wed May 21 2008 - 02:17:10 CDT)
- AMBER: $AMBERHOME/dat/slko Francesco Pietra (Wed May 21 2008 - 07:47:59 CDT)
- Re: AMBER: atom type in glycam06 Lachele Foley (Lists) (Wed May 21 2008 - 08:37:51 CDT)
- Re: AMBER: $AMBERHOME/dat/slko Gustavo Seabra (Wed May 21 2008 - 09:29:35 CDT)
- AMBER: ptraj analyze matrix Seth Lilavivat (Wed May 21 2008 - 09:53:28 CDT)
- AMBER: amber tools installation vijayaraj_at_clri.info (Wed May 21 2008 - 10:22:37 CDT)
- Re: AMBER: amber tools installation David A. Case (Wed May 21 2008 - 10:30:32 CDT)
- Re: AMBER: xLeap compilation issues Sasha Buzko (Wed May 21 2008 - 10:52:00 CDT)
- AMBER: pressure regulation methods Vlad Cojocaru (Wed May 21 2008 - 11:25:08 CDT)
- Re: AMBER: analysis REMD rebeca_at_mmb.pcb.ub.es (Wed May 21 2008 - 12:03:59 CDT)
- Re: AMBER: analysis REMD Carlos Simmerling (Wed May 21 2008 - 12:18:06 CDT)
- Re: AMBER: massively parallel computation Robert Duke (Wed May 21 2008 - 12:37:34 CDT)
- Re: AMBER: massively parallel computation Atro Tossavainen (Wed May 21 2008 - 12:49:03 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Wed May 21 2008 - 08:33:35 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Ross Walker (Wed May 21 2008 - 13:05:20 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Wed May 21 2008 - 14:09:10 CDT)
- AMBER: ff99 and ff03 forcefield parameters Peter Kiss (Wed May 21 2008 - 16:01:47 CDT)
- AMBER: Parallel Self-guided Langevin simulation Dirar Homouz (Wed May 21 2008 - 17:23:27 CDT)
- AMBER: about hydrogen bond in amber force field WANG,YING (Wed May 21 2008 - 21:24:47 CDT)
- RE: AMBER: about hydrogen bond in amber force field Ross Walker (Wed May 21 2008 - 22:32:06 CDT)
- Re: AMBER: about hydrogen bond in amber force field Carlos Simmerling (Thu May 22 2008 - 02:08:08 CDT)
- Re: AMBER: amber tools installation vijayaraj_at_clri.info (Thu May 22 2008 - 03:55:00 CDT)
- Re: AMBER: $AMBERHOME/dat/slko Francesco Pietra (Thu May 22 2008 - 04:14:55 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Thu May 22 2008 - 05:06:48 CDT)
- Re: AMBER: Parallel Self-guided Langevin simulation David A. Case (Thu May 22 2008 - 05:16:23 CDT)
- AMBER: COM RESTRAINT fatima.chami_at_durham.ac.uk (Thu May 22 2008 - 07:17:09 CDT)
- RE: AMBER: Regarding binding free energy calculation using MM_PBSA method nag raj (Thu May 22 2008 - 07:18:59 CDT)
- AMBER: potassium ion Lars Skjærven (Thu May 22 2008 - 08:09:59 CDT)
- AMBER: amber10 installation vijayaraj_at_clri.info (Thu May 22 2008 - 09:22:47 CDT)
- AMBER: AMBER file preparation for protein-carbohydrate complex Neha Gandhi (Thu May 22 2008 - 09:31:50 CDT)
- Re: AMBER: amber10 installation Ibrahim Moustafa (Thu May 22 2008 - 10:03:15 CDT)
- RE: AMBER: $AMBERHOME/dat/slko Ross Walker (Thu May 22 2008 - 10:24:47 CDT)
- AMBER: Bond-angle-dihedral-improper-vdw energy terms for part of a system Pavan G (Thu May 22 2008 - 10:37:56 CDT)
- RE: AMBER: amber10 installation Ross Walker (Thu May 22 2008 - 10:40:20 CDT)
- RE: AMBER: $AMBERHOME/dat/slko Francesco Pietra (Thu May 22 2008 - 10:44:10 CDT)
- AMBER: Force field in water and in vacuum ?? Chih-Ying Lin (Thu May 22 2008 - 10:46:15 CDT)
- RE: AMBER: Parallel Self-guided Langevin simulation Dirar Homouz (Thu May 22 2008 - 10:58:27 CDT)
- RE: AMBER: Bond-angle-dihedral-improper-vdw energy terms for part of a system Ross Walker (Thu May 22 2008 - 10:54:51 CDT)
- RE: AMBER: Force field in water and in vacuum ?? Ross Walker (Thu May 22 2008 - 11:06:36 CDT)
- Re: AMBER: $AMBERHOME/dat/slko Gustavo Seabra (Thu May 22 2008 - 12:00:36 CDT)
- Re: AMBER: $AMBERHOME/dat/slko Francesco Pietra (Thu May 22 2008 - 12:48:49 CDT)
- Re: AMBER: potassium ion Bill Ross (Thu May 22 2008 - 13:27:21 CDT)
- Re: AMBER: $AMBERHOME/dat/slko Gustavo Seabra (Thu May 22 2008 - 13:41:41 CDT)
- RE: AMBER: How to set a ZN atom radius for PB calculations Ray Luo (Thu May 22 2008 - 15:41:36 CDT)
- RE: AMBER: CAVITY_SURFTEN & CAVITY_OFFSET default params Ray Luo (Thu May 22 2008 - 15:37:04 CDT)
- Re: AMBER: AMBER file preparation for protein-carbohydrate complex Lachele Foley (Lists) (Thu May 22 2008 - 16:39:44 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Thu May 22 2008 - 17:24:33 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Thu May 22 2008 - 17:28:34 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Thu May 22 2008 - 17:29:55 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Ross Walker (Thu May 22 2008 - 17:40:54 CDT)
- AMBER: Calculate the RESP charge Fe3+ of heme (p450) chen bents (Thu May 22 2008 - 21:16:12 CDT)
- Re: AMBER: COM RESTRAINT David A. Case (Fri May 23 2008 - 00:19:24 CDT)
- Re: AMBER: Calculate the RESP charge Fe3+ of heme (p450) David A. Case (Fri May 23 2008 - 00:35:29 CDT)
- Re: AMBER: Mn2+ parameters in AMBER Guillermo Mulliert Carlín (Fri May 23 2008 - 01:26:51 CDT)
- AMBER: self-diffusion coefficient and Berendsen Jennifer.Thomas_at_cbt.uhp-nancy.fr (Fri May 23 2008 - 03:03:49 CDT)
- AMBER: help MD running error Qiuting Hong (Fri May 23 2008 - 03:40:12 CDT)
- Re: AMBER: Mn2+ parameters in AMBER jitrayut jitonnom (Fri May 23 2008 - 03:58:10 CDT)
- Re: AMBER: self-diffusion coefficient and Berendsen Andreas Svrcek-Seiler (Fri May 23 2008 - 04:22:57 CDT)
- Re: AMBER: ff99 and ff03 forcefield parameters Vlad Cojocaru (Fri May 23 2008 - 04:31:47 CDT)
- Re: AMBER: ff99 and ff03 forcefield parameters Vlad Cojocaru (Fri May 23 2008 - 04:43:38 CDT)
- AMBER: PBC in 2D fatima.chami_at_durham.ac.uk (Fri May 23 2008 - 08:13:39 CDT)
- Re: AMBER: ff99 and ff03 forcefield parameters Peter Kiss (Fri May 23 2008 - 09:27:15 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Fri May 23 2008 - 09:57:48 CDT)
- RE: AMBER: help MD running error Ross Walker (Fri May 23 2008 - 10:30:03 CDT)
- Re: AMBER: ff99 and ff03 forcefield parameters Vlad Cojocaru (Fri May 23 2008 - 10:52:03 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Fri May 23 2008 - 11:35:36 CDT)
- Re: AMBER: ff99 and ff03 forcefield parameters Peter Kiss (Fri May 23 2008 - 13:42:48 CDT)
- AMBER: how generate the final output file using mmpbsa luzhenw1_at_msu.edu (Fri May 23 2008 - 15:49:33 CDT)
- AMBER: Restart MD Simulation dpandit_at_brandeis.edu (Fri May 23 2008 - 16:56:23 CDT)
- RE: AMBER: Restart MD Simulation Ross Walker (Fri May 23 2008 - 17:28:16 CDT)
- AMBER: ff94 vs. ff03 Swarup Gupta (Fri May 23 2008 - 19:26:46 CDT)
- AMBER: how to extract energy WANG,YING (Fri May 23 2008 - 20:08:13 CDT)
- AMBER: periodic bondary condition WANG,YING (Fri May 23 2008 - 20:16:34 CDT)
- AMBER: ptraj mask not working with psf file Dong Xu (Fri May 23 2008 - 21:53:27 CDT)
- RE: AMBER: ff94 vs. ff03 Ross Walker (Fri May 23 2008 - 21:58:45 CDT)
- RE: AMBER: how to extract energy Ross Walker (Fri May 23 2008 - 22:07:41 CDT)
- RE: AMBER: periodic boundary condition Ross Walker (Fri May 23 2008 - 22:09:39 CDT)
- Re: AMBER: how generate the final output file using mmpbsa Miguel Ortiz-Lombardía (Sat May 24 2008 - 01:40:40 CDT)
- RE: AMBER: how to extract energy Francesco Pietra (Sat May 24 2008 - 02:24:13 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Sat May 24 2008 - 07:02:34 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Sat May 24 2008 - 07:26:37 CDT)
- RE: AMBER: Restart MD Simulation dpandit_at_brandeis.edu (Sat May 24 2008 - 08:40:40 CDT)
- AMBER: Amber9 vs Amber10+MKL benchmark Francesco Pietra (Sat May 24 2008 - 08:48:12 CDT)
- AMBER: Fw: Amber9 vs Amber10+MKL benchmark Francesco Pietra (Sat May 24 2008 - 08:51:53 CDT)
- AMBER: calculating the energy from the restart file priya priya (Sat May 24 2008 - 09:03:46 CDT)
- Re: AMBER: CAVITY_SURFTEN & CAVITY_OFFSET default params ke dong (Sat May 24 2008 - 09:46:19 CDT)
- AMBER: Fw: Amber9 vs Amber10+MKL benchmark Francesco Pietra (Sat May 24 2008 - 09:50:45 CDT)
- AMBER: caculating nonpolar solvation energies ke dong (Sat May 24 2008 - 09:53:17 CDT)
- Re: AMBER: how to extract energy David A. Case (Sat May 24 2008 - 15:21:22 CDT)
- Re: AMBER: self-diffusion coefficient and Berendsen David A. Case (Sat May 24 2008 - 15:20:27 CDT)
- Re: AMBER: AMBER file preparation for protein-carbohydrate complex n.gandhiau_at_gmail.com (Sun May 25 2008 - 02:17:55 CDT)
- Re: AMBER: AMBER file preparation for protein-carbohydrate complex Karl Kirschner (Sun May 25 2008 - 04:25:35 CDT)
- Re: AMBER: self-diffusion coefficient and Berendsen Jennifer.Thomas_at_cbt.uhp-nancy.fr (Sun May 25 2008 - 05:47:22 CDT)
- AMBER: trajectories into trajectory Hakkim Boy (Sun May 25 2008 - 06:30:22 CDT)
- Re: AMBER: trajectories into trajectory Florian Haberl (Sun May 25 2008 - 07:10:41 CDT)
- RE: AMBER: how to extract energy WANG,YING (Sun May 25 2008 - 08:57:20 CDT)
- RE: AMBER: periodic boundary condition WANG,YING (Sun May 25 2008 - 08:58:20 CDT)
- AMBER: mass weighted rms fit Dong Xu (Sun May 25 2008 - 11:11:43 CDT)
- Re: AMBER: mass weighted rms fit Adrian Roitberg (Sun May 25 2008 - 11:26:11 CDT)
- AMBER: using amber ports in gromacs Cristina Sisu (Sun May 25 2008 - 13:22:58 CDT)
- AMBER: using amber ports in Gromacs Cristina Sisu (Sun May 25 2008 - 13:28:26 CDT)
- Re: AMBER: using amber ports in Gromacs Carlos Simmerling (Sun May 25 2008 - 14:32:05 CDT)
- Re: AMBER: self-diffusion coefficient and Berendsen David A. Case (Sun May 25 2008 - 23:09:32 CDT)
- AMBER: is in vacuo simulation neccessary? Anamika Awasthi (Mon May 26 2008 - 00:18:58 CDT)
- Re: AMBER: is in vacuo simulation neccessary? Mark Abraham (Mon May 26 2008 - 00:44:20 CDT)
- Re: AMBER: Parallel Self-guided Langevin simulation David A. Case (Mon May 26 2008 - 01:06:03 CDT)
- AMBER: Umbrella Sampling for proteins German Erlenkamp (Mon May 26 2008 - 04:23:56 CDT)
- AMBER: peptide at the box center during NVT-MD Darek Czapiewski (Mon May 26 2008 - 05:01:45 CDT)
- Re: AMBER: peptide at the box center during NVT-MD David A. Case (Mon May 26 2008 - 11:09:51 CDT)
- AMBER: B-factor calculation from data with different write frequencies Sally Pias (Mon May 26 2008 - 23:19:42 CDT)
- AMBER: Which is best temperature controlling method sudipta sinha (Tue May 27 2008 - 05:25:02 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao (Tue May 27 2008 - 10:37:57 CDT)
- Re: AMBER: Problems installing Amber Tools for Amber 10 Scott Brozell (Tue May 27 2008 - 12:17:19 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao (Tue May 27 2008 - 11:03:54 CDT)
- Re: AMBER: B-factor calculation from data with different write frequencies Bill Ross (Tue May 27 2008 - 11:44:23 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Dong Xu (Tue May 27 2008 - 13:20:09 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao (Tue May 27 2008 - 14:29:43 CDT)
- AMBER: error when read inpcrd WANG,YING (Tue May 27 2008 - 15:32:02 CDT)
- RE: AMBER: error when read inpcrd Ross Walker (Tue May 27 2008 - 15:50:23 CDT)
- RE: AMBER: error when read inpcrd WANG,YING (Tue May 27 2008 - 16:14:02 CDT)
- Re: AMBER: B-factor calculation from data with different write frequencies Sally Pias (Tue May 27 2008 - 22:42:13 CDT)
- AMBER: bugfix (imin=5) in amber9 Xioling Chuang (Tue May 27 2008 - 23:23:09 CDT)
- Re: AMBER: Which is best temperature controlling method David A. Case (Tue May 27 2008 - 23:59:23 CDT)
- Re: AMBER: bugfix (imin=5) in amber9 David A. Case (Wed May 28 2008 - 00:16:40 CDT)
- Re: AMBER: Which is best temperature controlling method Reena ..... (Wed May 28 2008 - 00:34:39 CDT)
- AMBER: compilation problem with AMBER10 bhargav patel (Wed May 28 2008 - 00:56:15 CDT)
- RE: AMBER: Parallel Self-guided Langevin simulation Dirar Homouz (Wed May 28 2008 - 01:31:03 CDT)
- Re: AMBER: Which is best temperature controlling method sudipta sinha (Wed May 28 2008 - 01:43:32 CDT)
- AMBER: Hydration free energies of charged ions using PME Markus Kaukonen (Wed May 28 2008 - 01:51:26 CDT)
- Re: AMBER: Which is best temperature controlling method Mark Abraham (Wed May 28 2008 - 02:02:14 CDT)
- Re: AMBER: compilation problem with AMBER10 Atro Tossavainen (Wed May 28 2008 - 03:04:09 CDT)
- AMBER: install amber tools Alejandro Valbuena (Wed May 28 2008 - 05:14:35 CDT)
- AMBER: energy pairwise decomposition in GB/SA simulation wfli_at_biophy.nju.edu.cn (Wed May 28 2008 - 05:29:42 CDT)
- AMBER: Segmentation faults trying to run sander mpi Idan Gabdank (Wed May 28 2008 - 05:59:09 CDT)
- AMBER: restarting molecular dynamics Germain Vallverdu (Wed May 28 2008 - 08:18:16 CDT)
- Re: AMBER: restarting molecular dynamics Adrian Roitberg (Wed May 28 2008 - 08:34:17 CDT)
- Re: AMBER: restarting molecular dynamics Germain Vallverdu (Wed May 28 2008 - 09:25:23 CDT)
- AMBER: mbondi radii for gaff atom types Sara J (Wed May 28 2008 - 10:03:52 CDT)
- AMBER: note on the molsurf and "Assertion `sarg1 >= 0.0' failed" error Kateryna Miroshnychenko (Wed May 28 2008 - 10:08:19 CDT)
- AMBER: protonate in Amber10 Benjamin Juhl (Wed May 28 2008 - 09:55:06 CDT)
- AMBER: parallel test / libmpi_f90.so.0 Arturas Ziemys (Wed May 28 2008 - 10:10:36 CDT)
- Re: AMBER: parallel test / libmpi_f90.so.0 Arturas Ziemys (Wed May 28 2008 - 10:24:14 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao (Wed May 28 2008 - 10:51:12 CDT)
- Re: AMBER: restarting molecular dynamics Adrian Roitberg (Wed May 28 2008 - 10:48:45 CDT)
- Re: AMBER: Parallel Self-guided Langevin simulation David A. Case (Wed May 28 2008 - 11:46:55 CDT)
- Re: AMBER: install amber tools David A. Case (Wed May 28 2008 - 11:56:30 CDT)
- Re: AMBER: Segmentation faults trying to run sander mpi David A. Case (Wed May 28 2008 - 12:00:34 CDT)
- Re: AMBER: Hydration free energies of charged ions using PME David A. Case (Wed May 28 2008 - 11:51:26 CDT)
- Re: AMBER: note on the molsurf and "Assertion `sarg1 >= 0.0' failed" error David A. Case (Wed May 28 2008 - 12:27:31 CDT)
- Re: AMBER: mbondi radii for gaff atom types David A. Case (Wed May 28 2008 - 12:31:30 CDT)
- Re: AMBER: Which is best temperature controlling method David A. Case (Wed May 28 2008 - 12:32:33 CDT)
- Re: AMBER: Which is best temperature controlling method Adrian Roitberg (Wed May 28 2008 - 12:43:09 CDT)
- Re: AMBER: B-factor calculation from data with different write frequencies Bill Ross (Wed May 28 2008 - 12:47:28 CDT)
- Re: AMBER: B-factor calculation from data with different write frequencies Adrian Roitberg (Wed May 28 2008 - 12:54:09 CDT)
- Re: AMBER: Which is best temperature controlling method sudipta sinha (Wed May 28 2008 - 13:02:53 CDT)
- Re: AMBER: B-factor calculation from data with different write frequencies Bill Ross (Wed May 28 2008 - 13:11:30 CDT)
- Re: AMBER: B-factor calculation from data with different write frequencies Bill Ross (Wed May 28 2008 - 13:18:06 CDT)
- Re: AMBER: B-factor calculation from data with different write frequencies Adrian Roitberg (Wed May 28 2008 - 13:58:53 CDT)
- AMBER: rmsd vs frame Francesco Pietra (Wed May 28 2008 - 17:56:24 CDT)
- AMBER: Fw: rmsd vs frame Francesco Pietra (Wed May 28 2008 - 18:19:11 CDT)
- AMBER: VMD Movie Campbell, Patrick (Wed May 28 2008 - 18:33:39 CDT)
- Re: AMBER: VMD Movie Carlos Simmerling (Wed May 28 2008 - 19:10:03 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao (Wed May 28 2008 - 23:07:18 CDT)
- RE: AMBER: Parallel Self-guided Langevin simulation Dirar Homouz (Thu May 29 2008 - 00:18:34 CDT)
- AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Dong Xu (Thu May 29 2008 - 00:56:48 CDT)
- Re: AMBER: Which is best temperature controlling method Germain Vallverdu (Wed May 28 2008 - 15:24:55 CDT)
- AMBER: ligand unit charge is not zero amor san juan (Thu May 29 2008 - 03:44:58 CDT)
- Re: AMBER: ligand unit charge is not zero mori_at_cerm.unifi.it (Thu May 29 2008 - 04:17:55 CDT)
- AMBER: how to overcome theunusual bonds formation Thomas Leonard (Thu May 29 2008 - 06:03:29 CDT)
- AMBER: solvatebox fatima.chami_at_durham.ac.uk (Thu May 29 2008 - 06:46:42 CDT)
- Re: AMBER: how to overcome theunusual bonds formation Florian Haberl (Thu May 29 2008 - 06:54:20 CDT)
- Re: AMBER: how to overcome theunusual bonds formation Thomas Leonard (Thu May 29 2008 - 07:01:43 CDT)
- Re: AMBER: how to overcome theunusual bonds formation Adrian Roitberg (Thu May 29 2008 - 07:07:14 CDT)
- Re: AMBER: Which is best temperature controlling method Robert Duke (Thu May 29 2008 - 07:19:22 CDT)
- Re: AMBER: how to overcome theunusual bonds formation Swarup Gupta (Thu May 29 2008 - 07:27:36 CDT)
- Re: AMBER: ligand unit charge is not zero amor san juan (Thu May 29 2008 - 07:32:57 CDT)
- Re: AMBER: ligand unit charge is not zero Swarup Gupta (Thu May 29 2008 - 07:48:13 CDT)
- AMBER: Installing PMEMD with Amber10 Justin A. Lemkul (Thu May 29 2008 - 08:23:05 CDT)
- Re: AMBER: Which is best temperature controlling method David A. Case (Thu May 29 2008 - 09:35:36 CDT)
- Re: AMBER: Installing PMEMD with Amber10 Robert Duke (Thu May 29 2008 - 09:44:38 CDT)
- Re: AMBER: Segmentation faults trying to run sander mpi Idan Gabdank (Thu May 29 2008 - 09:57:07 CDT)
- Re: AMBER: Segmentation faults trying to run sander mpi David A. Case (Thu May 29 2008 - 10:20:08 CDT)
- RE: AMBER: solvatebox Ross Walker (Thu May 29 2008 - 10:22:53 CDT)
- AMBER: VMD Movie 2 Campbell, Patrick (Thu May 29 2008 - 12:39:20 CDT)
- Re: AMBER: VMD Movie 2 Carlos Simmerling (Thu May 29 2008 - 12:48:10 CDT)
- Re: AMBER: note on the molsurf and "Assertion `sarg1 >= 0.0' failed" error Kateryna Miroshnychenko (Thu May 29 2008 - 02:22:17 CDT)
- AMBER: ptraj rmsd calculation Pavan G (Thu May 29 2008 - 13:08:36 CDT)
- AMBER: VMD Movie 3 Campbell, Patrick (Thu May 29 2008 - 13:12:20 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao (Thu May 29 2008 - 13:15:15 CDT)
- RE: AMBER: VMD Movie 3 Ross Walker (Thu May 29 2008 - 13:47:52 CDT)
- AMBER: NTC and NTF dpandit_at_brandeis.edu (Thu May 29 2008 - 14:18:14 CDT)
- Re: AMBER: Installing PMEMD with Amber10 Justin A. Lemkul (Thu May 29 2008 - 14:12:26 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Dong Xu (Thu May 29 2008 - 14:19:53 CDT)
- RE: AMBER: NTC and NTF Ross Walker (Thu May 29 2008 - 14:30:28 CDT)
- AMBER: VMD Movie 4 Campbell, Patrick (Thu May 29 2008 - 14:37:43 CDT)
- RE: AMBER: NTC and NTF dpandit_at_brandeis.edu (Thu May 29 2008 - 14:39:33 CDT)
- Re: AMBER: Installing PMEMD with Amber10 Robert Duke (Thu May 29 2008 - 15:16:39 CDT)
- AMBER: ptraj has trouble with x-plor psf file from VMD Dong Xu (Thu May 29 2008 - 15:23:56 CDT)
- Re: AMBER: Installing PMEMD with Amber10 Justin A. Lemkul (Thu May 29 2008 - 15:41:30 CDT)
- Re: AMBER: VMD Movie 3 Ibrahim Moustafa (Thu May 29 2008 - 16:03:16 CDT)
- Re: AMBER: protonate in Amber10 David A. Case (Thu May 29 2008 - 16:10:34 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao (Thu May 29 2008 - 16:47:43 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Cenk \(Jenk\) Andac (Thu May 29 2008 - 19:24:38 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Ross Walker (Thu May 29 2008 - 23:50:30 CDT)
- Re: AMBER: Installing PMEMD with Amber10 Atro Tossavainen (Fri May 30 2008 - 01:42:02 CDT)
- AMBER: Ptraj | Multiple trajout commands? Ian (Fri May 30 2008 - 03:39:23 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Fri May 30 2008 - 04:40:41 CDT)
- AMBER: Iron-Sulfur Cluster Joachim Reichelt (Fri May 30 2008 - 04:46:30 CDT)
- AMBER: nab Joachim Reichelt (Fri May 30 2008 - 04:48:56 CDT)
- Re: AMBER: Installing PMEMD with Amber10 Justin A. Lemkul (Fri May 30 2008 - 05:42:53 CDT)
- AMBER: Jarzynski fatima.chami_at_durham.ac.uk (Fri May 30 2008 - 06:44:41 CDT)
- AMBER: Sander instead of PMEMD Cristina Sisu (Fri May 30 2008 - 08:47:13 CDT)
- Re: AMBER: Sander instead of PMEMD Robert Duke (Fri May 30 2008 - 09:13:20 CDT)
- Re: AMBER: Sander instead of PMEMD Cristina Sisu (Fri May 30 2008 - 09:32:27 CDT)
- Re: AMBER: Sander instead of PMEMD Robert Duke (Fri May 30 2008 - 09:50:36 CDT)
- Re: AMBER: nab David A. Case (Fri May 30 2008 - 09:55:10 CDT)
- AMBER: VMD Movie 3 Campbell, Patrick (Fri May 30 2008 - 09:56:41 CDT)
- Re: AMBER: Sander instead of PMEMD Florian Haberl (Fri May 30 2008 - 10:06:42 CDT)
- Re: AMBER: Sander instead of PMEMD Francesco Pietra (Fri May 30 2008 - 10:17:15 CDT)
- Re: AMBER: Sander instead of PMEMD Cristina Sisu (Fri May 30 2008 - 10:22:10 CDT)
- Re: AMBER: Sander instead of PMEMD Robert Duke (Fri May 30 2008 - 10:28:24 CDT)
- Re: AMBER: Sander instead of PMEMD Florian Haberl (Fri May 30 2008 - 10:31:18 CDT)
- Re: AMBER: Jarzynski David Mobley (Fri May 30 2008 - 11:02:28 CDT)
- AMBER: tleap error message Wang,Ying (Fri May 30 2008 - 11:08:14 CDT)
- RE: AMBER: Sander instead of PMEMD Hu, Shaowen (JSC-SK)[USRA] (Fri May 30 2008 - 11:24:39 CDT)
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao (Fri May 30 2008 - 12:11:24 CDT)
- Re: AMBER: Sander instead of PMEMD Francesco Pietra (Fri May 30 2008 - 12:47:57 CDT)
- Re: AMBER: Iron-Sulfur Cluster Justine Condo (Fri May 30 2008 - 12:52:24 CDT)
- Re: AMBER: Sander instead of PMEMD Francesco Pietra (Fri May 30 2008 - 12:59:35 CDT)
- AMBER: igb and ibelly Holly Freedman (Fri May 30 2008 - 14:23:21 CDT)
- RE: AMBER: igb and ibelly Ross Walker (Fri May 30 2008 - 15:16:11 CDT)
- Re: AMBER: igb and ibelly David A. Case (Fri May 30 2008 - 15:20:52 CDT)
- RE: AMBER: igb and ibelly Holly Freedman (Fri May 30 2008 - 15:21:06 CDT)
- AMBER: SANDER and PMEMD with openmpi Ross Walker (Fri May 30 2008 - 17:18:04 CDT)
- Re: AMBER: igb and ibelly Holly Freedman (Fri May 30 2008 - 17:36:03 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Ross Walker (Fri May 30 2008 - 17:41:51 CDT)
- RE: Fw: RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Sat May 31 2008 - 01:44:24 CDT)
- Re: AMBER: Installing PMEMD with Amber10 Atro Tossavainen (Sat May 31 2008 - 06:23:31 CDT)
- Re: AMBER: Jarzynski fatima.chami_at_durham.ac.uk (Sat May 31 2008 - 06:50:24 CDT)
- Re: AMBER: Installing PMEMD with Amber10 Justin A. Lemkul (Sat May 31 2008 - 07:24:30 CDT)
- Re: AMBER: Iron-Sulfur Cluster FyD (Sat May 31 2008 - 07:35:31 CDT)
- AMBER: MMPBSA error Cristina Sisu (Sat May 31 2008 - 09:00:08 CDT)
- Re: AMBER: MMPBSA error Peter Gannett (Sat May 31 2008 - 09:15:40 CDT)
- Fw: RE: Fw: RE: AMBER: MKL libraries/Amber10 Francesco Pietra (Sat May 31 2008 - 09:22:35 CDT)
- Re: AMBER: MMPBSA error Cristina Sisu (Sat May 31 2008 - 09:53:32 CDT)
- AMBER: ptraj analyze modes from nmode Miguel Ortiz-Lombardía (Sat May 31 2008 - 10:40:50 CDT)
- Re: AMBER: SANDER and PMEMD with openmpi. Failure 'make test.pmemd' Francesco Pietra (Sat May 31 2008 - 13:31:04 CDT)
- RE: AMBER: SANDER and PMEMD with openmpi. Failure 'make test.pmemd' Ross Walker (Sat May 31 2008 - 15:57:48 CDT)
- AMBER: amber9 , ptraj vector commad issue Vijay Singh (Sat May 31 2008 - 18:34:23 CDT)
- Re: AMBER: Ptraj | Multiple trajout commands? Jianyin Shao (Sat May 31 2008 - 19:02:17 CDT)
Last message date: Wed Dec 31 2008 - 22:47:27 CST
Archived on: Thu Jan 08 2009 - 16:01:47 CST
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