AMBER Archive (2008)

Subject: Re: AMBER: MMPBSA error

From: Cristina Sisu (csds2_at_cam.ac.uk)
Date: Sat May 31 2008 - 09:53:32 CDT

ok,

thanks
On 31 May 2008, at 15:15, Peter Gannett wrote:

> Seems like it is an environment setting error not an MMPBSA or amber
> error.
>
> Pete
>
> >>> On 5/31/2008 at 10:00 AM, in message
> <484159E8.4050808_at_cam.ac.uk>, Cristina Sisu <csds2_at_cam.ac.uk> wrote:
> Dear Ambers,
>
> Hello again. I try to run the MMPBSA on some snapshots but it seems
> that
> something is going wrong. In the error log file, I get the following
> message:
> > Use of uninitialized value in concatenation (.) or string at
> > /usr/local/amber9/exe/mm_pbsa.pl line 22.
> > Can't locate mm_pbsa_global.pm in @INC (@INC contains: /src/mm_pbsa
> > /usr/lib/perl5/5.8.6/x86_64-linux-thread-multi /usr/lib/perl5/5.8.6
> > /usr/lib/perl5/site_perl/5.8.6/x86_64-linux-thread-multi
> > /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl
> > /usr/lib/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi
> > /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl .) at
> > /usr/local/amber9/exe/mm_pbsa.pl line 23.
> > BEGIN failed--compilation aborted at /usr/local/amber9/exe/
> mm_pbsa.pl
> > line 23.
>
> I am not sure if is a error in my input files (they seem ok: i have
> the
> snapshots, i have the binding-energy input file, etc...) or with AMBER
> itself. Can anyone give me any clue?
>
> Thanks,
> Cristina
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber_at_scripps.edu
> To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
> to majordomo_at_scripps.edu

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
      to majordomo_at_scripps.edu