AMBER Archive (2008)

Subject: RE: AMBER: amber10 installation

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Thu May 22 2008 - 10:40:20 CDT

Hi Vijay,

This really looks like your downloaded file is corrupted - actually is too
short. Are you certain it downloaded okay?

First check the size of the file:

ls -la Amber10.tar.bz2

It should be:

88214112 bytes

Then try running the following:

md5sum Amber10.tar.bz2

you should get:

1bafdb051058da759fe7f8727008c401 Amber10.tar.bz2

If not then your file differs from the download version in some way. Can you
try downloading the file again? Are you certain the directory you are
downloading the file to has enough space / quota?

All the best
Ross

> -----Original Message-----
> From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf
> Of vijayaraj_at_clri.info
> Sent: Thursday, May 22, 2008 7:23 AM
> To: amber_at_scripps.edu
> Subject: AMBER: amber10 installation
>
> Hellow,
>
> I am trying to install amber10 (after successful installation of amber
> tools) in cygwin
> machine. While extracting the amber10.tar.bz2 I am getting an error report
> as,
>
> .
> .
> .
> .
> amber10/test/vac_rna/Run.min
> amber10/test/vac_rna/prmtop
> amber10/test/vac_rna/md4.x
> amber10/test/vac_rna/Run.anal
> amber10/test/vac_rna/mdout.min.save
>
> bzip2: Compressed file ends unexpectedly;
> perhaps it is corrupted? *Possible* reason follows.
> bzip2: No error
> Input file = (stdin), output file = (stdout)
>
> It is possible that the compressed file(s) have become corrupted.
> You can use the -tvv option to test integrity of such files.
>
> You can use the `bzip2recover' program to attempt to recover
> data from undamaged sections of corrupted files.
>
> tar: Unexpected EOF in archive
> tar: Unexpected EOF in archive
> tar: Error is not recoverable: exiting now
>
> I have tried in newly downloaded one also, but still getting same error.
> Can anyone give
> me a solution for this one?
>
> Thank you.
>
> vijay
>
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber_at_scripps.edu
> To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
> to majordomo_at_scripps.edu

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
      to majordomo_at_scripps.edu