AMBER Archive (2008)

Subject: AMBER: periodic bondary condition

From: WANG,YING (wangying_at_ufl.edu)
Date: Fri May 23 2008 - 20:16:34 CDT


Hi, Dear Ambers,

I solvate my specimen in explicit water, like TIP3P box. I let the
buffer to be 8 angstrom. If I want to let some of the covalent
bond across the periodic boundary condition, could anybody tell me
how to acchieve it? Thanks very much in advance!!

Best,

Ying

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