AMBER Archive (2008)

Subject: Re: AMBER: B-factor calculation from data with different write frequencies

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Wed May 28 2008 - 13:18:06 CDT

> The value of the B-factor CANNOT depend on your sampling frequency !

On second thought, it seems like it must to some extent, e.g. in the
limit, choosing just beginning and end frames of a long run would miss all
sorts of state. Also, couldn't it bias the result to sample one part of
the state space more than another?

Bill
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