AMBER Archive (2008)

Subject: Re: AMBER: MMPBSA error

From: Peter Gannett (pgannett_at_hsc.wvu.edu)
Date: Sat May 31 2008 - 09:15:40 CDT

Seems like it is an environment setting error not an MMPBSA or amber error.
 
Pete

>>> On 5/31/2008 at 10:00 AM, in message <484159E8.4050808_at_cam.ac.uk>, Cristina Sisu <csds2_at_cam.ac.uk> wrote:
Dear Ambers,

Hello again. I try to run the MMPBSA on some snapshots but it seems that
something is going wrong. In the error log file, I get the following
message:
> Use of uninitialized value in concatenation (.) or string at
> /usr/local/amber9/exe/mm_pbsa.pl line 22.
> Can't locate mm_pbsa_global.pm in @INC (@INC contains: /src/mm_pbsa
> /usr/lib/perl5/5.8.6/x86_64-linux-thread-multi /usr/lib/perl5/5.8.6
> /usr/lib/perl5/site_perl/5.8.6/x86_64-linux-thread-multi
> /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl
> /usr/lib/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi
> /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl .) at
> /usr/local/amber9/exe/mm_pbsa.pl line 23.
> BEGIN failed--compilation aborted at /usr/local/amber9/exe/mm_pbsa.pl
> line 23.

I am not sure if is a error in my input files (they seem ok: i have the
snapshots, i have the binding-energy input file, etc...) or with AMBER
itself. Can anyone give me any clue?

Thanks,
Cristina

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