AMBER Archive (2008)

Subject: Re: AMBER: Installation problem of AMBER on cluster

From: Bertrand P. S. Russell (betrussell23_at_gmail.com)
Date: Mon May 05 2008 - 07:40:56 CDT

Hi,

We have intalled Amber9 with OpenMPI. It was working fine after some work
around in the config file for parallel version. We used Ifort8 compiler. You
can get a ifort compiler trail version valid for 1year and can use for Amber
compilation.

As for as I know, OpenMPI is doing good. If you don't mind recompiling the
whole stuff, I would suggest you to try compiling OpenMPI with the latest
ifort compiler and proceed with Amber.

You can try adding "-ldl" flag after the g95 in config file. May work, a
wild guess.!

2008/5/5 sudipta sinha <sudipta.mml_at_gmail.com>:

> Dear Sir,
> Still we don't get any great success. I am sorry to say that in
> our department no system administrator is there. So that I am fully
> dependent on e-mail, google search etc. So, can you please help me how to
> run "nm" and track down naming conflicts? Also can you please help me how I
> fix that type of problem?
>
> Thanks and regards
> sudipta
>
>
> On Mon, May 5, 2008 at 7:02 AM, David A. Case <case_at_scripps.edu> wrote:
>
> > On Sun, May 04, 2008, sudipta sinha wrote:
> > >
> > > I couldn't understand how I compile MPICH2 with the
> > > -fno-second-underscore flag?.
> >
> > This would probably go into the FFLAGS variable you give to the
> > configure
> > command for mpich2. (It might be F90FLAGS: you will have to look at the
> > mpich2 documentation.)
> >
> > Is there any chance that you have a friend who is experienced with
> > computers
> > and knows how to run "nm" and track down naming conflicts like this?
> > This is
> > the sort of problem that is very difficult to debug remotely, but it
> > usually
> > straightforward who has been through this before and who has access to
> > your
> > machine.
> >
> > ...good luck...dac
> >
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>
> 

-- 
Life is not about getting somewhere in a hurry, but enjoying the journey to
the full.
Bertrand. P. S. Russell
Nanyang Drive,
Singapore.

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