AMBER Archive (2008)

Subject: AMBER: cannot read big .pdb files

From: WANG,YING (wangying_at_ufl.edu)
Date: Fri May 09 2008 - 21:00:29 CDT

Hi, Dear AMBERS,
I build a huge system and express it by .pdb file. But the space
between x,y,z parameters are limited. So if my system is too large
then I can not let it read by amber. For example,

ATOM 4112 xx xxx 197 -0.209 -2.116-999.344
ATOM 4113 xxx xxx 197 0.167 -1.985********
ATOM 4114 xx xxx 197 -0.201 -1.486-997.016
ATOM 4115 xx xxx 197 -1.166 -1.651-997.047
ATOM 4116 xx xxx 197 0.472 -2.629-996.483
ATOM 4117 xxx xxx 197 0.135 -2.888-995.623
ATOM 4118 xx xxx 197 0.611 0.635********
ATOM 4119 xx xxx 198 -0.108 0.357********

Could anybody tell me how to deal with it? Thanks a lot!! 

--
WANG,YING

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