AMBER Archive (2008)

Subject: Re: AMBER: nab

From: David A. Case (case_at_scripps.edu)
Date: Fri May 30 2008 - 09:55:10 CDT

On Fri, May 30, 2008, Joachim Reichelt wrote:
>
> where is the best starting point for interpreting normal mode analysis?
> We are searching for domain movement relative each other.

I'd suggest visualization. We use VMD with the "IED" (Interactive Essential
Dynamics") plugin. But there may well be other approaches as well.

%A J. Mongan
%T Interactive essential dynamics
%J J. Comp.-Aided Mol. Des.
%V 18
%P 433-436
%D 2004

...dac

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